hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj66157/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1172  ( 1200 res)   mfj66157

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     47.0    4.3e-10   1
DUF618   Protein of unknown function, DUF618              3.9      0.017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF618     1/1      73   141 ..     1    71 []     3.9    0.017
RRM_1      1/1     589   656 ..     1    74 []    47.0  4.3e-10

Alignments of top-scoring domains:
DUF618: domain 1 of 1, from 73 to 141: score 3.9, E = 0.017
                   *->snnRkKLvNlLYLANDVvQnSKvrKgpE..TFvdeFspvlveAfahi
                      ++   K++ +LY+   +v +S+ + g +++ F++ Fs+ +   f   
   mKIAA1172    73    PE--YKVP-GLYVIDSIVRQSRHQFGTDkdVFGPRFSKNITATFQYL 116  

                   ieegddkvKkklkRvinIWkeRnvFs<-*
                   +  ++ + K+k+ Rv+n W+  +vF    
   mKIAA1172   117 Y-LCPSEDKSKIVRVLNLWQKNGVFK    141  

RRM_1: domain 1 of 1, from 589 to 656: score 47.0, E = 4.3e-10
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+Vg L + tt++d+  l ++fGpiesi++++        ++G+a++
   mKIAA1172   589    LWVGQLDKRTTQQDVASLLEEFGPIESINMIP--------PRGCAYI 627  

                   eFedeedAekAldalnG..kelggrelrv<-*
                    +    dA +Al++l  ++++++++ +++   
   mKIAA1172   628 VMVHRQDAYRALQKLSRgnYKVNQKSIKI    656  

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