hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01652/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1171  ( 586 res)   mph01652

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable    -5.6     0.0026   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1      73   290 ..     1   310 []    -5.6   0.0026

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 73 to 290: score -5.6, E = 0.0026
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                       ++ ++++lRg+V++ L++  p +++  ++                 
   mKIAA1171    73    GYWAQSHTLRGKVYQRLIRDIP-CRTVTPD----------------- 101  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                        Ys++  +  +k +s                               
   mKIAA1171   102 --ASVYSDIVGKIVGKHSS------------------------------- 118  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                       + l+    + +   +             +n  g  + r++L++ + 
   mKIAA1171   119 --SSLPLPEFVDNTQVPTYC------------LNTRGEGAVRKILLCIAN 154  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkL..merylpnfl
                     p+  ++ c+ +  ++a+LL++    dE+++F   +++ +++++  ++ 
   mKIAA1171   155 QFPD--ISFCPALPAVVALLLHYSI--DEAECFEKACRIlsCNDPTKKLI 200  

                   fkdtnnfytpdlsglqadqlvldslleey...lPeLykHLqeqdkqskkk
                            ++   +   + ++ +l+ +y +  ++L+   +e        
   mKIAA1171   201 --------DQSFLAFESSCMTFGDLVNKYcqaAHKLMVAVSE-------- 234  

                   hvdkleidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflf
                          d +   + W ++lF+ elPl++ +R++Dv+++e    g+++l 
   mKIAA1171   235 -------DVLQVYSDWQRWLFG-ELPLNYFARVFDVFLVE----GYKVLY 272  

                   kialaiLklnedkllkld<-*
                   ++alaiLk  +++        
   mKIAA1171   273 RVALAILKFFHKVRAGQP    290  

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