hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01652/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1171  ( 586 res)   mph01652

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TLD      TLD                                            115.7    8.9e-31   1
TBC      TBC domain                                     -53.3     0.0057   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1      78   293 ..     1   219 []   -53.3   0.0057
TLD        1/1     393   581 ..     1   165 []   115.7  8.9e-31

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 78 to 293: score -53.3, E = 0.0057
                   *->vkeGvpsstrakVWavcsgAyqlrYAsage..Yerllrrgdekesqa
                               r+kV   +    + r   ++ + Y  ++ +  +k s +
   mKIAA1171    78    -----SHTLRGKVYQRLIRDIPCRTVTPDAsvYSDIVGKIVGKHSSS 119  

                   vdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGM
                          v  t v      +r    g    r++L       Pd+ +c + 
   mKIAA1171   120 SLPLPEFVDNTQVPTYCLNTR----GEGAVRKILLCIANQFPDISFCPAL 165  

                   NVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLds
                     v+A +L     E + F   +r+l    P     + +d + l    ++s
   mKIAA1171   166 PAVVALLLHYSIDEAECFEKACRILSCNDPT---KKLIDQSFLA---FES 209  

                   fveellprLYeYLlskgvdlkvvsLpwfLsLy.......attlPleeAlr
                           +  Y         +vs    L +y++ ++  +  lPl++  r
   mKIAA1171   210 SCMTFGDLVNKYCQAAHKLMVAVS-EDVLQVYsdwqrwlFGELPLNYFAR 258  

                   IfDiLFadGivllfrvaLAvLkil....keqiLda<-*
                   +fD +  +G+ +l rvaLA+Lk +++ ++ q L+    
   mKIAA1171   259 VFDVFLVEGYKVLYRVALAILKFFhkvrAGQPLES    293  

TLD: domain 1 of 1, from 393 to 581: score 115.7, E = 8.9e-31
                   *->LLYssskHGtSlntllrkvekeyddkgPtllvikdtDgqvFGayass
                      LL+ss +HG+Sl++++  +e    +++Ptll+ik+t  +v Gay s+
   mKIAA1171   393    LLFSSLQHGYSLSRFYFQCE----GHEPTLLLIKTTQKEVCGAYLST 435  

                   swrespvK...R.nFyGtgDsesCFLFtlnk...................
                    w+e+  K ++   F+Gtg  e+ F+F+l  + ++ +    ++++ ++ +
   mKIAA1171   436 DWSERT-KfggKlGFFGTG--EC-FVFRLQPevqryewvvikhpeltkat 481  

                   .......................elPp.kkfavyr.wTGknDddksnnfi
                   + ++++  ++++  ++ ++++ + l+p    ++++ +++ +     + f+
   mKIAA1171   482 slksseaagssslighcssdpadRLSPfLAARHFNlPSKTE-----SMFM 526  

                   ylntdqqtyPngLgiGGgsgrfgLwlDedlknGesspesceTFnnppLls
                    +  d       L iGGg g ++L++D+dl++G++    c TFnn pL  
   mKIAA1171   527 AGGND------CLIIGGG-GGQALYVDGDLNRGRTGH--CDTFNNQPL-- 565  

                   kdedFkIqdiEvWgvg<-*
                    +e F I  +E+Wg++   
   mKIAA1171   566 CSENFLIAAVEAWGFQ    581  

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