hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg11062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1170  ( 771 res)   mbg11062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
N1221    N1221-like protein                             514.2   9.8e-151   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
N1221      1/1       1   319 [.     1   385 []   514.2 9.8e-151

Alignments of top-scoring domains:
N1221: domain 1 of 1, from 1 to 319: score 514.2, E = 9.8e-151
                   *->eaarlekrlsspassqpaldfeltdfdgleDELsEwFdytfWeylel
                          + +r+s++++++p+l+fe+ d+dg+++ELsE+++yt  e+le+
   mKIAA1170     1    ----NLRRESEGSVDCPTLEFEYGDSDGHAAELSELYSYT--ENLEF 41   

                   gqnkkcFekLRkydqpslfsedenyqsldldqkRnfvlkLldeLevssrs
                   ++n+kcFe+    d+++++++++++ +l++d+++++v+ Lld+Lev+sr+
   mKIAA1170    42 TTNRKCFEE----DFRTQVQDTKEWLELEEDAQKTYVMGLLDRLEVVSRE 87   

                   lrnkalrallYIAqGtfaevvkaaLPnfadhkvrtSieehlqsiRrNvll
                   +r+k++ra+lY+AqGtf+e+              +S+ ++l++ R+N++l
   mKIAA1170    88 KRLKVARAVLYLAQGTFGEC--------------DSEVDVLHWSRYNCFL 123  

                   LlelgllseivelFkkeiedgrisKAsaracRdsnlnlardteKWRTRQL
                   L+++g++s+++el+++ei+++++   s++a R++++++a++te       
   mKIAA1170   124 LYQMGTFSAFLELLHMEIDNSQA---SSSALRKPAVSIADSTE------- 163  

                   PTmVDNElLrvlltiLYfitevildeRendeeevdDLetRkafiaelneP
                           Lrvll+++Y+++e+i+ eRe d++ ++  ++R++f++el+++
   mKIAA1170   164 --------LRVLLSVMYLMVENIRLEREIDPCGWR--TARETFRTELSFS 203  

                   veNgepLvefLtdmiekfrwgsDKrlhfpitqvGttfGiPGaanqhrmLm
                   ++N+ep++ +L++m++kf++g+  ++hfpi                    
   mKIAA1170   204 THNEEPFALLLFSMVTKFCSGL--APHFPI-------------------- 231  

                   kkvilLLfKvllLqfGgfEelsvlKeeKrsiagLhnikedsikveksmla
                   kkv+lLL+Kv+++++GgfE+l++lK +Kr+ +gL+++ edsi+v+ksm+a
   mKIAA1170   232 KKVLLLLWKVVMFTLGGFEHLQALKIQKRAELGLPPLAEDSIQVVKSMRA 281  

                   aSPldyeafReeitrApppsrFpsrgmpasklpldvDn<-*
                   aSP+ y+ ++ e ++Appps+ + r++++++l++++D+   
   mKIAA1170   282 ASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDS    319  

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