hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00252/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1169  ( 590 res)   mph00252

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Ion_trans Ion transport protein                         117.3    2.9e-31   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Ion_trans   1/1     248   460 ..     1   228 []   117.3  2.9e-31

Alignments of top-scoring domains:
Ion_trans: domain 1 of 1, from 248 to 460: score 117.3, E = 2.9e-31
                   *->ileildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDfl
                         +  +vf +i+ +E ++k+ +lg+         Yl s+wN++Df 
   mKIAA1169   248    HVPWSYLVFLTIYGVELFMKVAGLGP-------VEYLSSGWNLFDFS 287  

                   vvlpslislilsllgggsegdlyvreskfsttpegsygllsvlrllRllR
                   v+ +++++l+  +l+++                      + ++ +lR l 
   mKIAA1169   288 VTAFAFLGLLALTLNMEP---------------------FYFIVVLRPLQ 316  

                   vLRllrlirrapglfRWelrtlGWelnslgrslksllnvllllllllfif
                      llrl+++ ++     +r++   l +++  l++++ ++l ll + + f
   mKIAA1169   317 ---LLRLFKLKKR-----YRNV---LDTMFELLPRMASLGLTLLTFYYSF 355  

                   aiigvqlFggelnkcc........................npingntnFd
                   ai+g+ +F g+l++ c+++++  +     +++ +++++ +++ ++ +nFd
   mKIAA1169   356 AIVGMEFFNGRLTPNCcntstvadayrfinhtvgnktkveEGYYYLNNFD 405  

                   sfgnallwlFqtmTteGwgdvmpdtl.agtvlgkiyfvsfiilggflllN
                   +++n++ +lF +    +w  +m+ + + ++ ++ +yf++f+i+ + +++ 
   mKIAA1169   406 NILNSFVTLFELTVVNNWYIIMEGVTsQTSHWSRLYFMTFYIVTM-VVMT 454  

                   Lfiavi<-*
                   +++a i   
   mKIAA1169   455 IIVAFI    460  

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