hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09970/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1168  ( 1259 res)   mbg09970

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FragX_IP Cytoplasmic Fragile-X interacting family      3695.0          0   1
DUF1394  Protein of unknown function (DUF1394)         -174.9       0.28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1394    1/1      45   309 ..     1   313 []  -174.9     0.28
FragX_IP   1/1       7  1259 .]     1  1293 []  3695.0        0

Alignments of top-scoring domains:
DUF1394: domain 1 of 1, from 45 to 309: score -174.9, E = 0.28
                   *->tveiFlDFE..NAQPteeER.....EiYnqveeVLndseliLddlqs
                        ++   FE++NA  t   R  ++  ++   +e L ++      l  
   mKIAA1168    45    QANFDTNFEdrNAFVTGIARyieqaTVHSSMNEMLEEGHDYAVMLYT 91   

                   YrGageeIReAIkn..psDpelqekAWaAVlPlVarLkrfYEfSleLEki
                    r +  +I     n++p+  e+ ek  + ++P V +L +f  f  +    
   mKIAA1168    92 WRSCSRAIPQVKCNeqPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIER 141  

                   vpkLLgaLtsgpldPtqhLenqQALAKQfAeIl...hFVLkF...DelKM
                   + +    L+          e+    + + A +l+ + F+  F   DelK 
   mKIAA1168   142 FCSEVKRLCHA--------ERRKDFVSE-AYLLtlgKFINMFavlDELKN 182  

                   rnPAIQNDFSYYRRtlsRmrinnkeaeinneVnnELANqGVPELPRmSLF
                       + ND S Y R+   + + ++         +E  N         S+F
   mKIAA1168   183 MKCSVKNDHSAYKRA--AQFLRKMA---DPQSIQESQN--------LSMF 219  

                   yAeaTPMLKvLSeaTdkFvsenktLPieNTTdvLsTmanVCrvMLEnpey
                   +A          +  +  + +     i    + L+ + n+C +  En   
   mKIAA1168   220 LANH--------NRITQCLHQQLE-VIPGYEELLADIVNICVDYYEN--- 257  

                   lsrfTqedtkmlClRVMVGliILyDHVHPvGAFVktSkiDmKgCirlLKL
                      +T  + k++ l VM     L D     G      k D K  i l K+
   mKIAA1168   258 KMYLT-PSEKHMLLKVMGFGLYLMD-----GNVSNIYKLDAKKRINLSKI 301  

                   eqppessegLLNALRFTTKHLNDesTPKqIr<-*
                   +                          Kq++   
   mKIAA1168   302 DKFF-----------------------KQLQ    309  

FragX_IP: domain 1 of 1, from 7 to 1259: score 3695.0, E = 0
                   *->MtakvTldDAlSNVelLdeLalPDdqPcIEarplsilYraNFDTNFE
                      Mt++vTl+DAlSNV+lL+eL+lPD+qPcIE++p+si+Y+aNFDTNFE
   mKIAA1168     7    MTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFE 53   

                   DRnaFVTGIAkYiEeATrHaqlNdmLeEglkhAvmlYTWRcCSRAiPqaK
                   DRnaFVTGIA+YiE+AT+H+++N+mLeEg+++AvmlYTWR+CSRAiPq+K
   mKIAA1168    54 DRNAFVTGIARYIEQATVHSSMNEMLEEGHDYAVMLYTWRSCSRAIPQVK 103  

                   sNeQPNRvEIyEktVEVLkPEVsKLlkFMyFqrkAIerFceEVkRLCHaE
                   +NeQPNRvEIyEktVEVL+PEV+KL+kFMyFqrkAIerFc+EVkRLCHaE
   mKIAA1168   104 CNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEVKRLCHAE 153  

                   kRkDFVSEAYLLTLGkFINMFAVLDELKNMKaSvKNDfStyrRAaQFLka
                   +RkDFVSEAYLLTLGkFINMFAVLDELKNMK+SvKND+S+y+RAaQFL++
   mKIAA1168   154 RRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRK 203  

                   MsDtqavqesQNLSMFLAtqNkIkddlkdqletIeGYEeLLaDvVNICvh
                   M+D+q++qesQNLSMFLA++N+I+++l++qle+I+GYEeLLaD+VNICv+
   mKIAA1168   204 MADPQSIQESQNLSMFLANHNRITQCLHQQLEVIPGYEELLADIVNICVD 253  

                   mYEtklYLtPeEKHMlvKVmgFgLFLMDgdaaNiaKLDqKKrislsriDk
                   +YE+k+YLtP+EKHMl+KVmgFgL+LMDg+++Ni+KLD+KKri+ls+iDk
   mKIAA1168   254 YYENKMYLTPSEKHMLLKVMGFGLYLMDGNVSNIYKLDAKKRINLSKIDK 303  

                   iFKtLeVVPLfGDMQIepfayikrSsHYeenkSKWpLsdkesispqvniv
                   +FK+L+VVPLfGDMQIe+++yi +S+HYeenkSKW+ ++++sispq+ni+
   mKIAA1168   304 FFKQLQVVPLFGDMQIELARYIETSAHYEENKSKWT-CTQSSISPQYNIC 352  

                   eklqqIReDHvkYiselArysNevavtGsGldeqksDsEnReitdLALrG
                   e+++qIR+DH+++iselArysN+++vtGsGld+qksD+E+Re++dLALrG
   mKIAA1168   353 EQMVQIRDDHIRFISELARYSNSEVVTGSGLDSQKSDEEYRELFDLALRG 402  

                   lQLLskWsaaVvEvySWKLlhPTdkkdNkeCPeeAEEYERATRYNYtseE
                   lQLLskWsa+V+EvySWKL+hPTdk++Nk+CP++AEEYERATRYNYtseE
   mKIAA1168   403 LQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEE 452  

                   KfALievIAMIKGLQvllgriEsvlseaiRktiYveLQdFvqltlrEPLr
                   KfA++evIAMIKGLQvl+gr+Esv+++aiR+tiY++LQdF+q+tlrEPLr
   mKIAA1168   453 KFAFVEVIAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLR 502  

                   kAVkkKKdllaSilqsvrdtisDwekgleptdDvkGkkkspaakGdkdps
                   +AV+kKK++l+S+lq++r+ti+Dwe+g+ep++D       p+++G+kdp+
   mKIAA1168   503 QAVRKKKNVLISVLQAIRKTICDWEGGREPPND-------PCLRGEKDPK 545  

                   ggfdIrvPRrtvgPsSTQLYMvRTmLESLIaDKlsGgKktLRkelDgkii
                   ggfdI+vPRr+vgPsSTQLYMvRTmLESLIaDK sG+KktLR++lDg+i+
   mKIAA1168   546 GGFDIKVPRRAVGPSSTQLYMVRTMLESLIADK-SGSKKTLRSSLDGPIV 594  

                   lkIevFhkkSfywsaLlnlSdslqeccdLSQLWFREFYLEmTMGrkvnkc
                   l+Ie+Fhk+Sf++++Lln+S++lq+ccdLSQLWFREF+LE+TMGr     
   mKIAA1168   595 LAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELTMGR----- 639  

                   lvrhqhneeckdlitmekRIQFPIEMSMPWILTDhILetkEPSlmEyvLY
                                     RIQFPIEMSMPWILTDhILetkEPS+mEyvLY
   mKIAA1168   640 ------------------RIQFPIEMSMPWILTDHILETKEPSMMEYVLY 671  

                   pLDLYNDsAyYaltkFkKQFLYDEvEAEVNLCFDQFVYKLseqiFahYKq
                   pLDLYNDsAyYaltkFkKQFLYDE+EAEVNLCFDQFVYKL++qiFa+YK+
   mKIAA1168   672 PLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKA 721  

                   LAgsvLLDKRFraEckrlGviirsyPsanRyEtLLkQRHVQLLGRSiDLN
                   +AgsvLLDKRFraEck++Gvii+ yP++nRyEtLLkQRHVQLLGRSiDLN
   mKIAA1168   722 MAGSVLLDKRFRAECKNYGVIIP-YPPSNRYETLLKQRHVQLLGRSIDLN 770  

                   rlitQRinaallKsldaAIsrFEsedltsIVELemLleiNRlcHkLLskv
                   rlitQRi+aa++Ksld+AIsrFEsedltsIVELe+LleiNRl+H+LL+k+
   mKIAA1168   771 RLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCKH 820  

                   LhsldsFDdlfkEANHnVnaPyGRITLHVFwELNYDFlpNycYNgsTnRF
                   + +ldsFD++f+EANHnV+aPyGRITLHVFwELN+DFlpNycYNgsTnRF
   mKIAA1168   821 M-TLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRF 869  

                   vRtkvvfssrqepqReKPpqvsqyYlwGSKsLnaAysniynaYsqfvGtp
                   vRt+++f  +qepqR+KP++v++yYl+GSK+Ln+Ays+iy++Y++fvG+p
   mKIAA1168   870 VRTAIPF--TQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPP 917  

                   HfkaicRLLgYQGIAVvldelLKdivkrLlqgkilqyvktlievMPKvCk
                   Hfk+icRLLgYQGIAVv++elLK ivk+Llqg+ilqyvktlievMPK+C+
   mKIAA1168   918 HFKTICRLLGYQGIAVVMEELLK-IVKSLLQGTILQYVKTLIEVMPKICR 966  

                   LPRseYGSpgvLeYYvhhLedivkYpelKtelfQsLRElGNaIvFClliE
                   LPR+eYGSpg+Le+++h+L+di++Y+elKt++fQsLRE+GNaI+FClliE
   mKIAA1168   967 LPRHEYGSPGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIE 1016 

                   qALsQEEvcDLlhAAafqnilPrpyikeaekqekklkrLEakYarlhlve
                   qALsQEEvcDLlhAA+fqnilPr+yike+e++e+++krLEakYa+lhlv+
   mKIAA1168  1017 QALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVP 1066 

                   iiekigtddGQaaIAregdLlTkERLCCGLsiFEviLvRiksyLaaDpiW
                   +ie++gt++ Q+aIAregdLlTkERLCCGLs+FEviL+Ri+syL +DpiW
   mKIAA1168  1067 LIERLGTPQ-QIAIAREGDLLTKERLCCGLSMFEVILTRIRSYL-QDPIW 1114 

                   tGppPtNGvihvDECvEfhRlwSALQFvyCiPvrddnEvtaEelFGdgLn
                   +GppPtNGv+hvDECvEfhRlwSA+QFvyCiPv+ +nE+taE++FGdgLn
   mKIAA1168  1115 RGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVG-TNEFTAEQCFGDGLN 1163 

                   WaGctlIvLLGQqRRFevLDFCYHllrVqraDGKDEvikgirLkkMvdRI
                   WaGc++IvLLGQqRRF+++DFCYHll+Vqr+DGKDE+ik+++LkkM+dRI
   mKIAA1168  1164 WAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRI 1213 

                   RrFQvLNnqiFiILnkyLkeneddsstVEhVRcFaPPvHpslassa<-*
                   R++Q+LNn++F+ILnky+k++e+dsstVEhVRcF+PP+H+sla+++   
   mKIAA1168  1214 RKYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC    1259 

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