hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj05058/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1164  ( 623 res)   mpj05058

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF544   Protein of unknown function (DUF544)           269.0    6.3e-77   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF544     1/1     283   408 ..     1   150 []   269.0  6.3e-77

Alignments of top-scoring domains:
DUF544: domain 1 of 1, from 283 to 408: score 269.0, E = 6.3e-77
                   *->aNvLiLkpkvtRyaeEliRLppkkevvTseeLvelLvDvlLqvkpkE
                      +NvL+L++kv+         pp++e++T+e+L+e+L+D++L +kpkE
   mKIAA1164   283    LNVLLLAWKVK--------FPPMMEIITAEQLMEYLGDYMLEAKPKE 321  

                   kdEglkenfeqNiqdlldlLpkLhtGLdVNvkFnRkYLivmtGnvLLaCg
                   ++E+++ n+eqN++d++++L+kL+tGLdVNv+F+               g
   mKIAA1164   322 ISEIQRVNYEQNMSDAMAILHKLQTGLDVNVRFT---------------G 356  

                   iddFEyTpElsIFdLlnvpLYHGWlvDpqideNiveaigklSYnelvekl
                   +++FEyTpE+++FdLl++pLYHGWlvDpqid+ iv+a+g++SYn+lvek+
   mKIAA1164   357 VRVFEYTPECIVFDLLDIPLYHGWLVDPQIDD-IVKAVGNCSYNQLVEKI 405  

                   vql<-*
                   +++   
   mKIAA1164   406 ISC    408  

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