hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj27154/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1163  ( 638 res)   mfj27154

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate    89.8    3.2e-22   5
IG       Immunoglobulin                                  45.4    7.7e-09   1
LRR_PS   Leucine-rich repeat, plant-specific subfamil    30.4    0.00025   5
IGc2     Immunoglobulin C-2 Type                         26.5     0.0036   1
LRRCT    Leucine rich repeat C-terminal domain           25.2     0.0093   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_PS     1/5     231   253 ..     1    24 []     6.2  1.9e+02
LRR_TYP    1/5     231   254 ..     1    24 []    22.9    0.045
LRR_PS     2/5     255   277 ..     1    24 []    16.1        5
LRR_TYP    2/5     255   278 ..     1    24 []    25.0     0.01
LRR_PS     3/5     279   301 ..     1    24 []     1.4  7.9e+02
LRR_TYP    3/5     279   302 ..     1    24 []    20.3     0.27
LRR_PS     4/5     303   325 ..     1    24 []    12.8       26
LRR_TYP    4/5     303   326 ..     1    24 []    18.8     0.79
LRR_PS     5/5     330   352 ..     1    24 []     7.9  1.1e+02
LRR_TYP    5/5     330   353 ..     1    24 []    17.2      2.3
LRRCT      1/1     367   417 ..     1    55 []    25.2   0.0093
IGc2       1/1     427   493 ..     1    56 []    26.5   0.0036
IG         1/1     421   504 ..     1    58 []    45.4  7.7e-09

Alignments of top-scoring domains:
LRR_PS: domain 1 of 5, from 231 to 253: score 6.2, E = 1.9e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      Lt+L +L Ls+N+L+  I s+ +    
   mKIAA1163   231    LTNLHSLLLSHNHLN-FISSEAFV    253  

LRR_TYP: domain 1 of 5, from 231 to 254: score 22.9, E = 0.045
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nL +L Ls+N+L  + ++aF +   
   mKIAA1163   231    LTNLHSLLLSHNHLNFISSEAFVP    254  

LRR_PS: domain 2 of 5, from 255 to 277: score 16.1, E = 5
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                       ++L++LdLs+N+L+ ++ ++l++   
   mKIAA1163   255    VPNLRYLDLSSNHLH-TLDEFLFS    277  

LRR_TYP: domain 2 of 5, from 255 to 278: score 25.0, E = 0.01
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       pnLr LdLs+N+L +L + +F++   
   mKIAA1163   255    VPNLRYLDLSSNHLHTLDEFLFSD    278  

LRR_PS: domain 3 of 5, from 279 to 301: score 1.4, E = 7.9e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L+ L+vL L+nN++   +  + +    
   mKIAA1163   279    LQALEVLLLYNNHIV-VVDRNAFE    301  

LRR_TYP: domain 3 of 5, from 279 to 302: score 20.3, E = 0.27
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L++L L nN++  + ++aF++   
   mKIAA1163   279    LQALEVLLLYNNHIVVVDRNAFED    302  

LRR_PS: domain 4 of 5, from 303 to 325: score 12.8, E = 26
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      + +Lq L+Ls+N++s  +P +l +   
   mKIAA1163   303    MAQLQKLYLSQNQIS-RFPVELIK    325  

LRR_TYP: domain 4 of 5, from 303 to 326: score 18.8, E = 0.79
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      + +L++L+Ls Nq+++ P ++  +   
   mKIAA1163   303    MAQLQKLYLSQNQISRFPVELIKD    326  

LRR_PS: domain 5 of 5, from 330 to 352: score 7.9, E = 1.1e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L++L  LdLs+N+L  ++P +  +   
   mKIAA1163   330    LPKLMLLDLSSNKLK-KLPLTDLQ    352  

LRR_TYP: domain 5 of 5, from 330 to 353: score 17.2, E = 2.3
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp+L  LdLs+N+L+ LP   +q    
   mKIAA1163   330    LPKLMLLDLSSNKLKKLPLTDLQK    353  

	[output cut off at A = 10 top alignments]
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