hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18051/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1162  ( 354 res)   mbg18051

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Thioredoxin Thioredoxin                                  22.0    9.7e-07   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Thioredoxin   1/1      53   155 ..     1   114 []    22.0  9.7e-07

Alignments of top-scoring domains:
Thioredoxin: domain 1 of 1, from 53 to 155: score 22.0, E = 9.7e-07
                   *->vvvvltdenFdeevlkaksdkpVLVdFyApWCGpCKmlAPeyeklAq
                       v   t++n+     ++  ++ ++++FyApWC  C++   e+e +A+
   mKIAA1162    53    RVQPMTASNWTL---VM--EGEWMLKFYAPWCPSCQQTDSEWETFAK 94   

                   eykgesd.dvkfaKVDaDenpkdlAskygVrgfPTlkffknGkkepvdyv
                         + ++ + KVD+ ++p  l  ++ V+  P ++  k+G      y 
   mKIAA1162    95 NGE---TlQISVGKVDVIQEP-GLSGRFFVTTLPAFFHAKDGIF--RRYR 138  

                   gGArtkddLvafikkhlg<-*
                   g+    +dL+++i +      
   mKIAA1162   139 GP-GIYEDLQNYILEKKW    155  

//