hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08081/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1160  ( 300 res)   mbg08081

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Isy1     Isy1-like splicing family                      621.9   3.6e-183   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Isy1       1/1      16   283 ..     1   287 []   621.9 3.6e-183

Alignments of top-scoring domains:
Isy1: domain 1 of 1, from 16 to 283: score 621.9, E = 3.6e-183
                   *->MARNaEKAmsmLaRfreaKeeegkkpkeYSRYrRPklvsecksLpeA
                      MARNaEKAm++LaRfr+a++eegk+ ke    rRP+l+sec++Lp+A
   mKIAA1160    16    MARNAEKAMTALARFRQAQLEEGKV-KE----RRPFLASECTELPKA 57   

                   eKwRrqIikEIskKiarIQNagLgEfrIRDLNDEINkLlreKhhWEvrIr
                   eKwRrqIi+EIskK+a+IQNagLgEfrIRDLNDEINkLlreK+hWEvrI+
   mKIAA1160    58 EKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIK 107  

                   ELGGhdYskkkaKmldaEGsevDlmNsgggirGYkYFGAAKdLPGVRELF
                   ELGG+dY+k+++Kmld+EG+ev      +g+rGYkYFGAAKdLPGVRELF
   mKIAA1160   108 ELGGPDYGKVGPKMLDHEGKEV------PGNRGYKYFGAAKDLPGVRELF 151  

                   ekspeppkRktRaeLmKrIDAeYyGYlDdeDGvLipLeqkiEtklikklv
                   ek+p pp+RktRaeLmK+ID+eYyGYlD++DGv++pLeq++E+kl+++lv
   mKIAA1160   152 EKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELV 201  

                   eeFkaerhekvaraakkeedeeesvinIykleenvLgdeeedeaeeerie
                   e++kaer++++ar++k+ee+eee++inIy+++e    +e+++e+++e+++
   mKIAA1160   202 EKWKAEREARLARGEKEEEEEEEEEINIYAVTE----EESDEEGNQEKAG 247  

                   eegqeekerkfiaHVPvPtqqdiEemLLerrKkeLLsKYa<-*
                   e+gq    +kfiaHVPvP+qq+iEe+L++r+K+eLL+KYa   
   mKIAA1160   248 EDGQ----QKFIAHVPVPSQQEIEEALVRRKKMELLQKYA    283  

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