hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp03324/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1159  ( 257 res)   mbp03324

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Neurexophilin Neurexophilin                             672.8   1.7e-198   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Neurexophilin   1/1       7   257 .]     1   286 []   672.8 1.7e-198

Alignments of top-scoring domains:
Neurexophilin: domain 1 of 1, from 7 to 257: score 672.8, E = 1.7e-198
                   *->qllrclvlflvqgslyLviCdqedgvpksEGLdwedkdatGlkvGsv
                      ql+rc+++flvqgslyLviC+q+dg+p+sE                 
   mKIAA1159     7    QLTRCCFVFLVQGSLYLVICGQDDGPPGSE----------------- 36   

                   vdPerddselknrlrvsrKrssiskksrlafrGkendtdldlrydtPeas
                    dPe dd+e+++r+rv+rKr++is+ksr+ +                 +s
   mKIAA1159    37 -DPEHDDHEGQPRPRVPRKRGHISPKSRPLA-----------------NS 68   

                   sledLwdwlanateiqeprprakrrpivktgKfKKmFGWGDFhSNIKTVk
                   +l++L++++++ +++++++p+++++++ ++ K+KK+FGWGDF+SNIKTV+
   mKIAA1159    69 TLLGLLAPPGEVWGVLGQPPNRPKQSPLPSTKVKKIFGWGDFYSNIKTVA 118  

                   LNLLiTGKIVDHGNGTFSVyFrHNsTGqGNvSvSLVPPsKvVEFeleqQi
                   LNLL+TGKIVDHGNGTFSV+FrHN+TGqGN+S+SLVPPsK+VEF++eqQi
   mKIAA1159   119 LNLLVTGKIVDHGNGTFSVHFRHNATGQGNISISLVPPSKAVEFHQEQQI 168  

                   vieaKeSKsFNCRiEyEKvdrakktsLCnyDPsKiCyqeqtQShvsWlCS
                   +ieaK+SK+FNCR+E+EKv+r+++tsLC++DP+KiC+++++QS+++W+CS
   mKIAA1159   169 FIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCS 218  

                   kPFKViCiYIaFYStDYkLVQKVCPDYNYHSdTPYypSG<-*
                   +PFKV+C+YIaFYStDY+LVQKVCPDYNYHSdTPYypSG   
   mKIAA1159   219 QPFKVVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG    257  

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