hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj07349/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1158  ( 268 res)   mfj07349

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
V-set    Immunoglobulin V-set domain                     84.2    2.6e-21   1
ig       Immunoglobulin domain                           16.4       0.67   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ig         1/1      91   175 ..     1    65 []    16.4     0.67
V-set      1/1      75   196 ..     1   130 []    84.2  2.6e-21

Alignments of top-scoring domains:
ig: domain 1 of 1, from 91 to 175: score 16.4, E = 0.67
                   *->GesvtLtCsvs...gfgppdvtvtWl.rngk.lt.gvlvtssenngd
                      G+s++L+C ++ ++ +    + v W+ r  +++    + +   ++  
   mKIAA1158    91    GNSMKLRCISCmkrEEVEATTVVEWFyRPEGgKDfLIYEYRNGHQEV 137  

                   styqt..............sLtitnvtpeDggtYtCvv<-*
                    ++ +++ + +++++ ++ s t++nvt +D+g YtC v   
   mKIAA1158   138 ESPFQgrlqwngskdlqdvSITVLNVTLNDSGLYTCNV    175  

V-set: domain 1 of 1, from 75 to 196: score 84.2, E = 2.6e-21
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                      +++v+ e p+          +  +++G s +L+C        +++++
   mKIAA1158    75    CFPVCVEVPS----------ETEAVQGNSMKLRCISC---MKREEVE 108  

                   gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn
                   +t+ v W++ +p G+k  li+        y++g++ v+++f+gr +++g+
   mKIAA1158   109 ATTVVEWFY-RPEGGKDFLIY-------EYRNGHQEVESPFQGRLQWNGS 150  

                   pskgdfsLtIsnlqlsDsGtYyCa.............gggtrLtVl<-*
                    +  d+s+t  n++l DsG Y+C  +++ + + +++  + trL+ l   
   mKIAA1158   151 KDLQDVSITVLNVTLNDSGLYTCNvsrefefeahrpfVKTTRLIPL    196  

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