hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid29003/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1157  ( 640 res)   mid29003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PP2C     Protein phosphatase 2C                          49.6    7.1e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PP2C       1/1     237   611 ..     1   305 []    49.6  7.1e-11

Alignments of top-scoring domains:
PP2C: domain 1 of 1, from 237 to 611: score 49.6, E = 7.1e-11
                   *->ldvgvsrmqgwrksmeDahialknlnssssgkdswsffavfDGhgGs
                      + +  +r+ ++r s++ ++    + ns+ s  +s ++   fDGh+Gs
   mKIAA1157   237    ITSTPNRNSKRRSSLPNGEGRQLKENSE-SEGISCHYWSLFDGHAGS 282  

                   qaakyagkhlhk..........tilaerksfpegdpwEmkl.........
                    aa +a++ l  + +++ ++  +il++   +p++        ++++++++
   mKIAA1157   283 GAAVVASRLLQHhitqqlqdivEILKNSAILPPT------Clgeepestp 326  

                   ......................................sdledalkesfl
                    ++++ ++  + +++ + ++++++++++  ++++ +++ ++  al  +f 
   mKIAA1157   327 ahgrtltraaslrggvgapgspstpptrfftekkipheCLVIGALESAFK 376  

                   eadtdeelrsaeassankvltkedlssGsTAvvalirgnkklLyVANvGD
                   e d+ +e  +   s+ n       +s+G+TA++++    k  LyVAN+GD
   mKIAA1157   377 EMDLQIERER---SAYN-------ISGGCTALIVVCLLGK--LYVANAGD 414  

                   SRavLcrngnaikwavtLteDHkPsnedEreRIeaaGGfvsrvsgngRvn
                   SRa+++rng++i    +++   +P  e Er+R++ +  +  +      ++
   mKIAA1157   415 SRAIIIRNGEII----PMSSEFTP--ETERQRLQYLAFMQPH------LL 452  

                   Gv................................................
                   G++ ++ + +++ ++++ +++   ++ + ++   ++ ++++ + +   ++
   mKIAA1157   453 GNefthlefprrvqrkelgkkmlyrdfnmtgwayktiedddlkfpliyge 502  

                   ........fLavSRAfGDfelKpgsklgpeesleanyeyikspeqlVtae
                   +++ +      v+R +GD++lK  ++ +  +             +  +++
   mKIAA1157   503 gkkarvmaTIGVTRGLGDHDLKVHDSNIYIK-------------PFLSSA 539  

                   Pdvtsstdltp...dkDeFliLAcDGLWDvvsdqevvdivrselsdgn.r
                   P+v  + dl+  +++ D+ liLA+DGLWDv+s++ev + + ++l  ++++
   mKIAA1157   540 PEVR-VYDLSRyehGADDVLILATDGLWDVLSNEEVAEAITQFLPNCDpD 588  

                   sagdpmeaaeklvdeaiargseDni<-*
                        + aa++lv   +arg+  +    
   mKIAA1157   589 DPHRYTLAAQDLV--MRARGVLKDR    611  

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