hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp10042/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1154  ( 488 res)   mbp10042

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DCX      Domain in the Doublecortin (DCX) gene produc   278.3    5.8e-79   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DCX        1/2      25   113 ..     1    96 []   148.5  6.9e-40
DCX        2/2     147   234 ..     1    96 []   129.3  4.2e-34

Alignments of top-scoring domains:
DCX: domain 1 of 2, from 25 to 113: score 148.5, E = 6.9e-40
                   *->slvkpkrirvyRNGDrffkGvrlvvnrkrqfkSFeaLLqdlTelklv
                      s++++k + vyRNGD+ff+G+r+v+++k+ ++SF+++L+++T     
   mKIAA1154    25    SQPVVKSVLVYRNGDPFFAGRRVVIHEKK-VSSFDVFLKEVTG---- 66   

                   vkldlpf.aVRklYTldGgkkvtsldeledgDgvYVasgteEkFkkvdYg
                    ++++pf+aVR++YT+++g+++++ld++e+g g+YVa+g e +Fkk++Y+
   mKIAA1154    67 -GVQAPFgAVRNIYTPRTGHRIRKLDQIESG-GNYVAGGPE-AFKKLNYL 113  

                   <-*
                      
   mKIAA1154     -     -    

DCX: domain 2 of 2, from 147 to 234: score 129.3, E = 4.2e-34
                   *->slvkpkrirvyRNGDrffkGvrlvvnrkrqfkSFeaLLqdlTelklv
                      sl +p++i+++ NGD + +++rl++++k   ++++++Lq++Te   +
   mKIAA1154   147    SLHEPCTIFLIANGDLISPASRLLIPKKA-LNQWDHVLQMVTE---K 189  

                   vkldlpfaVRklYTldGgkkvtsldeledgDgvYVasgteEkFkkvdYg<
                   ++l+++ aV++lYTl+G k v+s +ele+g ++YVa+g++ kFk ++Y+ 
   mKIAA1154   190 ITLRSG-AVHRLYTLEG-KLVESGAELENG-QFYVAVGRD-KFKRLPYS  234  

                   -*
                     
   mKIAA1154     -    -    

//