hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp10042/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1154  ( 488 res)   mbp10042

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DCX      Doublecortin                                   167.2    2.8e-46   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DCX        1/2      47   108 ..     1    69 []   102.3  9.7e-27
DCX        2/2     169   229 ..     1    69 []    64.9  1.7e-15

Alignments of top-scoring domains:
DCX: domain 1 of 2, from 47 to 108: score 102.3, E = 9.7e-27
                   *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr
                      +v+++k+ v+sfd++L++    vT +++ p+Ga  vr++YT++++hr
   mKIAA1154    47    VVIHEKK-VSSFDVFLKE----VTGGVQAPFGA--VRNIYTPRTGHR 86   

                   islldeledggvYVAsgseaFk<-*
                   i++ld++e+gg+YVA+g+eaFk   
   mKIAA1154    87 IRKLDQIESGGNYVAGGPEAFK    108  

DCX: domain 2 of 2, from 169 to 229: score 64.9, E = 1.7e-15
                   *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr
                      l++ +k     +d +L+     vTeki l+ Ga  v +lYT++G ++
   mKIAA1154   169    LLIPKKA-LNQWDHVLQM----VTEKITLRSGA--VHRLYTLEG-KL 207  

                   islldeledggvYVAsgseaFk<-*
                   + +  ele+g++YVA+g+++Fk   
   mKIAA1154   208 VESGAELENGQFYVAVGRDKFK    229  

//