hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbf/mbf00011/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1151  ( 1906 res)   mbf00011

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPases associated with a variety of cellula    30.3    0.00027   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/1    1579  1716 ..     1    92 []    30.3  0.00027

Alignments of top-scoring domains:
AAA: domain 1 of 1, from 1579 to 1716: score 30.3, E = 0.00027
                   *->pgevvllvGppGsGKTTlaralarllgp..gviyidge.........
                      +++++ l Gp+G+GKT l + la +l +++g  + dg  +  + +++
   mKIAA1151  1579    KHRRLVLSGPSGTGKTYLTNRLAEYLVErsGREVTDGIvstfnmhqq 1625 

                   ggqrirlalalark............dvlllDEitslld...........
                   + + ++l l  + ++ ++ ++ ++ + v+llD++  +   +++ ++ +  
   mKIAA1151  1626 SCKDLQLYLSNLANqidretgigdvpLVILLDDLSEAGSiselvngaltc 1675 

                   .....vtviattn.......dldpallrrrfdrrivllril<-*
                   + ++   +i+ttn++ + +++ + +l  r++++   +++ +   
   mKIAA1151  1676 kyhkcPYIIGTTNqpvkmtpNHGLHLSFRMLTFSNNVEPAN    1716 

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