hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01533/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1149  ( 373 res)   mph01533

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Asp      Eukaryotic aspartyl protease                   -82.9    6.7e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Asp        1/1       2   290 ..     1   352 []   -82.9  6.7e-08

Alignments of top-scoring domains:
Asp: domain 1 of 1, from 2 to 290: score -82.9, E = 6.7e-08
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->eYygtIsIGTPpQkFtVvFDTGSSDLWVPDsSvyCtssySaqTniAC
                                                 VP         y        
   mKIAA1149     2    ---------------------------VP---------Y-------- 4    

                RF xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxx
                   kshgtFDPSkSSTYkslGttIf.sIsYGdGSSasGflgqDTVtvGGisvt
                     +g+           lGt  + sI  G +          TV  +   +t
   mKIAA1149     5 -TQGKWEGE-------LGTD-LvSIPHGPNV---------TVRANIAAIT 36   

                RF xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   nQqFGlatkEPGsfFvt.avfDGILGlGfpsieavggssaftytpVfdnl
                        +++k    fF++++   GILGl++ +i+        +  p+fd l
   mKIAA1149    37 -----ESDK----FFINgSNWEGILGLAYAEIARPD----DSLEPFFDSL 73   

                RF xxxxxxxxxxxxxx       xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ksQGLIdspaFSvY.......LNsddgsaqasgGeiiFGGvDpskYsGsl
                   ++Q  I  ++FS++  + + +LN      ++ gG+ i GG+D s+Y+Gsl
   mKIAA1149    74 VKQTHI-PNIFSLQlcgagfpLNQTE-ALASVGGSMIIGGIDHSLYTGSL 121  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx      x
                   twvpVtssddegivsqgyWqitldsitvggsaCHttfcssGcq......A
                    ++p+         ++ y+ + + +++++g+     +  + c + + ++ 
   mKIAA1149   122 WYTPIR--------REWYYEVIIVRVEINGQ----DLKMD-CKeynydkS 158  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx                  xxx
                   IlDTGTsLlygPssivskiakavGAsese..................GeY
                   I+D+GT+ l +P+ + ++ +k + A++s ++ +++   +++    + G  
   mKIAA1149   159 IVDSGTTNLRLPKKVFEAAVKSIKAASSTekfpdgfwlgeqlvcwqaGT- 207  

                RF xxxxxxxxxxxxxxxxxxx      xxxxxxxxxxxxxxxxxxxxxxxxx
                   vvdCdsisslpdvtFfigG......kkitVPpsayvlqnsqggssPndiC
                     + + +   p+++ +++G+ ++++ +it+ p +y   +++ ++s  d C
   mKIAA1149   208 -TPWNIF---PVISLYLMGevtnqsFRITILPQQYLRPVEDVATS-QDDC 252  

                RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   l.sGfqssddipppggplwILGDvFLRsyYvVFDrdNnrvGlApa<-*
                   ++++++      +++g ++  G v +  +YvVFDr+  r+G+A     
   mKIAA1149   253 YkFAVSQ-----SSTGTVM--GAVIMEGFYVVFDRARKRIGFAVS    290  

//