hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj27189/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1148 ( 1589 res) mfj27189 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ank Ankyrin repeat 228.9 7.5e-65 11 TPR_2 Tetratricopeptide repeat 60.9 2.7e-14 3 TPR_1 Tetratricopeptide repeat 45.9 8.8e-10 3 Extensin_2 Extensin-like region -124.6 0.13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/11 430 466 .. 1 33 [] 4.3 49 Ank 2/11 469 501 .. 1 33 [] 7.5 17 Ank 3/11 502 534 .. 1 33 [] 22.2 0.012 Ank 4/11 535 565 .. 1 33 [] 18.0 0.22 Ank 5/11 575 616 .. 1 33 [] 2.4 91 Ank 6/11 618 650 .. 1 33 [] 29.2 9.3e-05 Ank 7/11 651 683 .. 1 33 [] 28.6 0.00014 Ank 8/11 684 716 .. 1 33 [] 37.3 3.6e-07 Ank 9/11 717 749 .. 1 33 [] 33.0 7e-06 Ank 10/11 750 782 .. 1 33 [] 38.7 1.3e-07 Ank 11/11 783 815 .. 1 33 [] 18.1 0.21 TPR_1 1/3 839 872 .. 1 34 [] 1.2 25 TPR_2 1/3 839 872 .. 1 34 [] 16.8 0.54 TPR_1 2/3 886 919 .. 1 34 [] 18.3 0.19 TPR_2 2/3 886 919 .. 1 34 [] 19.8 0.066 TPR_1 3/3 920 953 .. 1 34 [] 30.8 3.1e-05 TPR_2 3/3 920 953 .. 1 34 [] 29.2 9.7e-05 Extensin_2 1/1 956 1398 .. 1 385 [] -124.6 0.13 Alignments of top-scoring domains: Ank: domain 1 of 11, from 430 to 466: score 4.3, E = 49 *->dGfTPLHlAalrg....nlevvklLlsqGAdlnaqdd<-* lA+lr+ +n++v +lL+ GA++n ++ mKIAA1148 430 TEGLSMALASLRNlytpNIKVSRLLILGGANINYRTE 466 Ank: domain 2 of 11, from 469 to 501: score 7.5, E = 17 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + L + ++ g++e+v lLl+ GA+++a mKIAA1148 469 NNAPILCVQSHLGYTEMVALLLEFGANVDASSE 501 Ank: domain 3 of 11, from 502 to 534: score 22.2, E = 0.012 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPL +Aa g l++v lL ++ A +++ d+ mKIAA1148 502 SGLTPLGYAAAAGFLSIVVLLCKKRAKVDHLDK 534 Ank: domain 4 of 11, from 535 to 565: score 18.0, E = 0.22 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ +L +Aalrg+levvk+L++ +d + mKIAA1148 535 NGQCALVHAALRGHLEVVKFLIQ--CDWTMAGQ 565 Ank: domain 5 of 11, from 575 to 616: score 2.4, E = 91 *->dGfTPLHlAalrgnlevvklLls.........qGAdlnaqdd<-* + +L Aa++g++e+v++Ll+ +++++++ A +n d mKIAA1148 575 AIQQALIAAASMGYTEIVSYLLDlpekdeeevERAQINSFDS 616 Ank: domain 6 of 11, from 618 to 650: score 29.2, E = 9.3e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L Aa rg l+v++lLl+qGA + ++ mKIAA1148 618 WGETALTAAAGRGKLDVCRLLLEQGAAVAQPNR 650 Ank: domain 7 of 11, from 651 to 683: score 28.6, E = 0.00014 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PL ++ g+ ++v lLl +GAd+n+ d+ mKIAA1148 651 RGAVPLFSTVRQGHWQIVDLLLTHGADVNMADK 683 Ank: domain 8 of 11, from 684 to 716: score 37.3, E = 3.6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL++Aa+ g+l v +Ll qGA++ + d+ mKIAA1148 684 QGRTPLMMAASEGHLGTVDFLLAQGASIALMDK 716 Ank: domain 9 of 11, from 717 to 749: score 33.0, E = 7e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G T+L +A+l+g+l+vv+ L+++GA ++ d+ mKIAA1148 717 EGLTALSWACLKGHLSVVRSLVDNGAATDHADK 749 Ank: domain 10 of 11, from 750 to 782: score 38.7, E = 1.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL lAa++g++evv++L+++GA + ++d mKIAA1148 750 NGRTPLDLAAFYGDAEVVQFLVDHGAMIEHVDY 782 Ank: domain 11 of 11, from 783 to 815: score 18.1, E = 0.21 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PL A+ + n++vv Ll++GA + q+ mKIAA1148 783 SGMRPLDRAVGCRNTSVVVTLLKKGAKIGCQTL 815 TPR_1: domain 1 of 3, from 839 to 872: score 1.2, E = 25 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + G ++k+gk +eA + y+ AL+ P mKIAA1148 839 LSKLMEEGDMFYKKGKVKEAAQRYQYALKKFPRE 872 TPR_2: domain 1 of 3, from 839 to 872: score 16.8, E = 0.54 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* l+ G+ yk+g+ +eA++ y+ Al+ +P+ mKIAA1148 839 LSKLMEEGDMFYKKGKVKEAAQRYQYALKKFPRE 872 TPR_1: domain 2 of 3, from 886 to 919: score 18.3, E = 0.19 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + nl + +k++++ A+e+ +kALel P+ mKIAA1148 886 VSLLLNLSRCRRKMNDFGMAEEFATKALELKPKS 919 TPR_2: domain 2 of 3, from 886 to 919: score 19.8, E = 0.066 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + +l nl ++ +k++d+ A+e+ kAlel P+ mKIAA1148 886 VSLLLNLSRCRRKMNDFGMAEEFATKALELKPKS 919 TPR_1: domain 3 of 3, from 920 to 953: score 30.8, E = 3.1e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +eayy ++ a ++ ++ +A+e++++A++l Pnn mKIAA1148 920 YEAYYARARAKRSSRQFAAALEDLKEAIKLCPNN 953 TPR_2: domain 3 of 3, from 920 to 953: score 29.2, E = 9.7e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ea+y++++a + ++++ Ale++++A++l Pnn mKIAA1148 920 YEAYYARARAKRSSRQFAAALEDLKEAIKLCPNN 953 Extensin_2: domain 1 of 1, from 956 to 1398: score -124.6, E = 0.13 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy + l++ + + + + + + PPPp p + PP p+ mKIAA1148 956 IQRLLMRVEEECRQMQQQ---QQQQPPPP--P---QQPPQELPEEET 994 kSPPPpkkpY.........................vYsSPPPPsyvykSP P + Y+ ++ +++ +++ ++ + + +++ S P v +SP mKIAA1148 995 EPEPQHEDIYsvqdifeeeyleqdvenvsiglqteARPSQGLP--VIQSP 1042 PPPkp.....yvYkSPPpPkyvY.....kSPPpPv.ykYkSPPPPthspp P + ++++ y+ +SP + v++ ++++S +P + Y+S P sp mKIAA1148 1043 PSSPAhrdsaYISSSPLGSHQVFdfrsnSSVGSPTrQGYQSTSPAL-SPT 1091 PpyvykSPPPPpkkyvykSpPpptPvYkYkSPPPPp....yvYkspPpPv + + P PP Sp Y+ PPP+++++ Y spP P+ mKIAA1148 1092 HQNSHYRPSPPH-----TSPAHQGA--SYRFSPPPVggqsKEYPSPP-PS 1133 kkripyvYkSPPPPpP.YvYk..SpPppvkkyiyksppppephkYvYkSP + r + Y+ PP vY+++S p+ y+ + ++ + kSP mKIAA1148 1134 PLRRGPQYRASPPAESmSVYRsqSGSPVR----YQQETNVSQLPGRPKSP 1179 ...PPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppkyVYkSpPpPv ++ PY + p ++ + P + +s p + V+ S P+ mKIAA1148 1180 lskMAQRPYQMPQLPVAVPQQGLRLQPAKAQIVRSNQPSSAVHSSTVIPT 1229 ipykYkSPPPPkkkyspaPrkpyvYkSPPPPt.................. Y + +s +Y+S + ++++ +++ ++ + mKIAA1148 1230 G--AYG-----QVAHS----MASKYQSSQGDMgvsqsrlvyqgsiggivg 1268 .......................yvYkSpPpPykpptppkiyksPPPPtP ++++ ++ + + + + ++++ + p +P+ +++ ++ y+ tP mKIAA1148 1269 dgrpvqhvqaslsagaicqhgglTKEDLPQRPSSAYRGGMRYSQ----TP 1314 .vyvYkspPpippik........sssppPvyvYkSpPppvysPPPPyvYs ++ +s+ p +++ + +++ss + v +p P + mKIAA1148 1315 qIGRSQSASYYPVCHskldlersSSQLGSPDVSHLIRRPISVNPNEIKPH 1364 sPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-* +P P + +++ + + sP + +S p + mKIAA1148 1365 PPTPRPLLHSQSVGLRFSPSSNSISSTSNLTPTF 1398 //