hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10449/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1146  ( 342 res)   mbg10449

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                  82.1    1.1e-20   5
SOCS_box SOCS box                                        64.9    1.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/5      43    78 ..     1    33 []     7.5       17
Ank        2/5      84   116 ..     1    33 []    23.6   0.0047
Ank        3/5     117   149 ..     1    33 []    26.8  0.00049
Ank        4/5     150   182 ..     1    33 []    18.1      0.2
Ank        5/5     198   230 ..     1    33 []    10.4      6.3
SOCS_box   1/1     303   342 .]     1    42 []    64.9  1.7e-15

Alignments of top-scoring domains:
Ank: domain 1 of 5, from 43 to 78: score 7.5, E = 17
                   *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-*
                      + +T LH Aa+ g+l+ ++ Ll+++++   +n +     
   mKIAA1146    43    CDDTRLHDAAYVGDLQTLRNLLQeesYRSRINEKSV    78   

Ank: domain 2 of 5, from 84 to 116: score 23.6, E = 0.0047
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +TPL +Aa  g+ ++v +L+ +GA+++++d    
   mKIAA1146    84    LPCTPLRIAATAGHGNCVDFLIRKGAEVDLVDV    116  

Ank: domain 3 of 5, from 117 to 149: score 26.8, E = 0.00049
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L +A+ +g+le  + Ll++GAd+n       
   mKIAA1146   117    KGQTALYVAVVNGHLESTEILLEAGADPNGSRH    149  

Ank: domain 4 of 5, from 150 to 182: score 18.1, E = 0.2
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +  TP  +A++ g+ +++k L+ +GAd+++      
   mKIAA1146   150    HRSTPVYHASRVGRDDILKALIRYGADVDVNHH    182  

Ank: domain 5 of 5, from 198 to 230: score 10.4, E = 6.3
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                          PL + a + nl++ +lLl++GA+++   +   
   mKIAA1146   198    LVVCPLYISAAYHNLQCFRLLLQAGANPDFNCN    230  

SOCS_box: domain 1 of 1, from 303 to 342: score 64.9, E = 1.7e-15
                   *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-*
                      pr+L +LCR+a+Rr+lg++rlhl ++ LPLP ++k++Ll ye   
   mKIAA1146   303    PRTLLSLCRVAVRRALGKYRLHL-VPSLPLPDPIKKFLL-YE    342  

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