hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj54204/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1144  ( 512 res)   mfj54204

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        42.4    6.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      52   161 ..     1   114 []    42.4  6.2e-08

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 52 to 161: score 42.4, E = 6.2e-08
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                        ++++vgg          k +      +L ++   +++ +++++  
   mKIAA1144    52    GEIRINVGG---------FKRRL--RSHTLLRF---PETRLGRLLLc 84   

                   ..................ieldDeallievspeaFralLnflYt.kldlp
                   ++++   +  ++ ++ ++++ +D      ++pe F  +L+f++t+kl+++
   mKIAA1144    85 hsreailelcddyddvqrEFYFD------RNPELFPYVLHFYHTgKLHVM 128  

                   eedvenveelLelAdfldSYGqip.lvelCeefllknl<-*
                    e  ++v ++ ++ +++   G+ +  ++ C+++ ++     
   mKIAA1144   129 AE--LCVFSFSQEIEYW---GINEfFIDSCCSYSYHGR    161  

//