hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj54204/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1144  ( 512 res)   mfj54204

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
K_tetra     K+ channel tetramerisation domain           176.7    3.7e-49   1
Ion_trans   Ion transport protein                       149.9    4.3e-41   1
Ion_trans_2 Ion channel                                  57.5    2.9e-13   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
K_tetra       1/1      54   153 ..     1   102 []   176.7  3.7e-49
Ion_trans     1/1     261   444 ..     1   228 []   149.9  4.3e-41
Ion_trans_2   1/1     365   450 ..     1    81 []    57.5  2.9e-13

Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 54 to 153: score 176.7, E = 3.7e-49
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      +r+NVGG++ +++++TL rf P+T+Lgrll ++s+eail+lcd+ydd
   mKIAA1144    54    IRINVGGFKRRLRSHTLLRF-PETRLGRLLLCHSREAILELCDDYDD 99   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde
                      E++FDR+P +F ++L+fY+t  GkLh++ e+c++sf++E+e++g++e
   mKIAA1144   100 VQREFYFDRNPELFPYVLHFYHT--GKLHVMaELCVFSFSQEIEYWGINE 147  

                   laielC<-*
                    +i++C   
   mKIAA1144   148 FFIDSC    153  

Ion_trans: domain 1 of 1, from 261 to 444: score 149.9, E = 4.3e-41
                   *->ileildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDfl
                       +ei++ + +++Ft+E + ++ +++ +      +k+++++ N++D+ 
   mKIAA1144   261    RFEIVEHFGIAWFTFELVARFAVAPDF------LKFFKNALNLIDLM 301  

                   vvlpslislilsllgggsegdlyvreskfsttpe.gsygllsvlrllRll
                   +++p++i+l++ l+ +                ++++  +l++v+++lRl+
   mKIAA1144   302 SIVPFYITLVVNLVVE----------------SSpTLANLGRVAQVLRLM 335  

                   RvLRllrlirrapglfRWelrtlGWelnslg.rslksllnvllllllllf
                   R   ++r++++a+      ++t+   l+slg +   s+ +v+llll l +
   mKIAA1144   336 R---IFRILKLAR------HSTG---LRSLGaTLKYSYKEVGLLLLYLSV 373  

                   ifaiigvqlFggelnkccnpingntnFdsfgnallwlFqtmTteGwgdvm
                   +++i++v  +  e+       ++n    +++ +++w++++mTt+G+gdv+
   mKIAA1144   374 GISIFSVVAYTIEK-------EENEGLATIPACWWWATVSMTTVGYGDVV 416  

                   pdtlagtvlgkiyfvsfiilggflllNLfiavi<-*
                   p     t+ gk+ + s +il g+l++ L+i +i   
   mKIAA1144   417 PG----TTAGKLTA-SACILAGILVVVLPITLI    444  

Ion_trans_2: domain 1 of 1, from 365 to 450: score 57.5, E = 2.9e-13
                   *->illllvlifgtvyyal.......epeeg.wewsfldalYFsfvTlTT
                       llll+l  g ++++    + ++e  eg    +   + ++++v++TT
   mKIAA1144   365    GLLLLYLSVGISIFSVvaytiekEENEGlA--TIPACWWWATVSMTT 409  

                   iGYGDivPlstdaGRlftivyiliGiplfllllavlgrflte<-*
                   +GYGD+vP+ t+aG+l + + il Gi +++l ++ +  +++    
   mKIAA1144   410 VGYGDVVPG-TTAGKLTASACILAGILVVVLPITLIFNKFSH    450  

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