hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mef/mef00011/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1141 ( 886 res) mef00011 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 284.7 7.1e-81 17 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/17 203 225 .. 1 23 [] 23.6 0.027 ZnF_C2H2 2/17 259 281 .. 1 23 [] 27.5 0.0018 ZnF_C2H2 3/17 371 393 .. 1 23 [] 26.0 0.0052 ZnF_C2H2 4/17 398 420 .. 1 23 [] 12.5 12 ZnF_C2H2 5/17 426 448 .. 1 23 [] 19.9 0.37 ZnF_C2H2 6/17 454 476 .. 1 23 [] 29.6 0.00043 ZnF_C2H2 7/17 482 504 .. 1 23 [] 28.7 0.00079 ZnF_C2H2 8/17 510 532 .. 1 23 [] 25.9 0.0057 ZnF_C2H2 9/17 538 560 .. 1 23 [] 18.9 0.72 ZnF_C2H2 10/17 566 588 .. 1 23 [] 16.1 4.8 ZnF_C2H2 11/17 691 713 .. 1 23 [] 10.2 22 ZnF_C2H2 12/17 719 741 .. 1 23 [] 27.2 0.0023 ZnF_C2H2 13/17 747 769 .. 1 23 [] 25.4 0.0077 ZnF_C2H2 14/17 775 797 .. 1 23 [] 26.0 0.0052 ZnF_C2H2 15/17 803 825 .. 1 23 [] 27.9 0.0014 ZnF_C2H2 16/17 831 853 .. 1 23 [] 23.4 0.031 ZnF_C2H2 17/17 859 881 .. 1 23 [] 25.9 0.0056 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 17, from 203 to 225: score 23.6, E = 0.027 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg+sfs+ ++L++H H mKIAA1141 203 YKCSE-CGESFSQShHLIQHWVLH 225 ZnF_C2H2: domain 2 of 17, from 259 to 281: score 27.5, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs+ L+ H+++H mKIAA1141 259 YTCQE-CGKRFSQNvYLQWHQKIH 281 ZnF_C2H2: domain 3 of 17, from 371 to 393: score 26.0, E = 0.0052 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cg++fs + +L +H+r H mKIAA1141 371 FRCKK-CGETFSGAfHLAKHQRAH 393 ZnF_C2H2: domain 4 of 17, from 398 to 420: score 12.5, E = 12 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC C+ +f+ ++ +H ++H mKIAA1141 398 YKCAS-CPAVFNLSkHCFQHRKSH 420 ZnF_C2H2: domain 5 of 17, from 426 to 448: score 19.9, E = 0.37 *->ykCpigCgksfssk.aLkrHmrvH<-* +C+ C ksf+++++L++H+ +H mKIAA1141 426 CECQG-CRKSFNWRsSLIKHQAIH 448 ZnF_C2H2: domain 6 of 17, from 454 to 476: score 29.6, E = 0.00043 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + Lk H+r+H mKIAA1141 454 YKCDE-CGKAFNHSsTLKIHQRIH 476 ZnF_C2H2: domain 7 of 17, from 482 to 504: score 28.7, E = 0.00079 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f+++++L++H+rvH mKIAA1141 482 HKCSE-CGKAFCRRtDLTEHQRVH 504 ZnF_C2H2: domain 8 of 17, from 510 to 532: score 25.9, E = 0.0057 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C ++f+++++L+rH +H mKIAA1141 510 HQCPV-CARTFNRPsHLVRHRLRH 532 ZnF_C2H2: domain 9 of 17, from 538 to 560: score 18.9, E = 0.72 *->ykCpigCgksfssk.aLkrHmrvH<-* + C + C+++f k++L+rH ++H mKIAA1141 538 FGCAK-CKETFIYKeQLERHNKIH 560 ZnF_C2H2: domain 10 of 17, from 566 to 588: score 16.1, E = 4.8 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg++f ++ L+ H+ +H mKIAA1141 566 YECKQ-CGEHFICRsTLNCHLSIH 588 [output cut off at A = 10 top alignments] //