hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/rodent/full/goal/mef/mef00011/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: mKIAA1141 ( 886 res) mef00011
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ZnF_C2H2 zinc finger 284.7 7.1e-81 17
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ZnF_C2H2 1/17 203 225 .. 1 23 [] 23.6 0.027
ZnF_C2H2 2/17 259 281 .. 1 23 [] 27.5 0.0018
ZnF_C2H2 3/17 371 393 .. 1 23 [] 26.0 0.0052
ZnF_C2H2 4/17 398 420 .. 1 23 [] 12.5 12
ZnF_C2H2 5/17 426 448 .. 1 23 [] 19.9 0.37
ZnF_C2H2 6/17 454 476 .. 1 23 [] 29.6 0.00043
ZnF_C2H2 7/17 482 504 .. 1 23 [] 28.7 0.00079
ZnF_C2H2 8/17 510 532 .. 1 23 [] 25.9 0.0057
ZnF_C2H2 9/17 538 560 .. 1 23 [] 18.9 0.72
ZnF_C2H2 10/17 566 588 .. 1 23 [] 16.1 4.8
ZnF_C2H2 11/17 691 713 .. 1 23 [] 10.2 22
ZnF_C2H2 12/17 719 741 .. 1 23 [] 27.2 0.0023
ZnF_C2H2 13/17 747 769 .. 1 23 [] 25.4 0.0077
ZnF_C2H2 14/17 775 797 .. 1 23 [] 26.0 0.0052
ZnF_C2H2 15/17 803 825 .. 1 23 [] 27.9 0.0014
ZnF_C2H2 16/17 831 853 .. 1 23 [] 23.4 0.031
ZnF_C2H2 17/17 859 881 .. 1 23 [] 25.9 0.0056
Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 17, from 203 to 225: score 23.6, E = 0.027
*->ykCpigCgksfssk.aLkrHmrvH<-*
ykC++ Cg+sfs+ ++L++H H
mKIAA1141 203 YKCSE-CGESFSQShHLIQHWVLH 225
ZnF_C2H2: domain 2 of 17, from 259 to 281: score 27.5, E = 0.0018
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ Cgk+fs+ L+ H+++H
mKIAA1141 259 YTCQE-CGKRFSQNvYLQWHQKIH 281
ZnF_C2H2: domain 3 of 17, from 371 to 393: score 26.0, E = 0.0052
*->ykCpigCgksfssk.aLkrHmrvH<-*
++C++ Cg++fs + +L +H+r H
mKIAA1141 371 FRCKK-CGETFSGAfHLAKHQRAH 393
ZnF_C2H2: domain 4 of 17, from 398 to 420: score 12.5, E = 12
*->ykCpigCgksfssk.aLkrHmrvH<-*
ykC C+ +f+ ++ +H ++H
mKIAA1141 398 YKCAS-CPAVFNLSkHCFQHRKSH 420
ZnF_C2H2: domain 5 of 17, from 426 to 448: score 19.9, E = 0.37
*->ykCpigCgksfssk.aLkrHmrvH<-*
+C+ C ksf+++++L++H+ +H
mKIAA1141 426 CECQG-CRKSFNWRsSLIKHQAIH 448
ZnF_C2H2: domain 6 of 17, from 454 to 476: score 29.6, E = 0.00043
*->ykCpigCgksfssk.aLkrHmrvH<-*
ykC++ Cgk f++ + Lk H+r+H
mKIAA1141 454 YKCDE-CGKAFNHSsTLKIHQRIH 476
ZnF_C2H2: domain 7 of 17, from 482 to 504: score 28.7, E = 0.00079
*->ykCpigCgksfssk.aLkrHmrvH<-*
+kC++ Cgk f+++++L++H+rvH
mKIAA1141 482 HKCSE-CGKAFCRRtDLTEHQRVH 504
ZnF_C2H2: domain 8 of 17, from 510 to 532: score 25.9, E = 0.0057
*->ykCpigCgksfssk.aLkrHmrvH<-*
++Cp+ C ++f+++++L+rH +H
mKIAA1141 510 HQCPV-CARTFNRPsHLVRHRLRH 532
ZnF_C2H2: domain 9 of 17, from 538 to 560: score 18.9, E = 0.72
*->ykCpigCgksfssk.aLkrHmrvH<-*
+ C + C+++f k++L+rH ++H
mKIAA1141 538 FGCAK-CKETFIYKeQLERHNKIH 560
ZnF_C2H2: domain 10 of 17, from 566 to 588: score 16.1, E = 4.8
*->ykCpigCgksfssk.aLkrHmrvH<-*
y+C++ Cg++f ++ L+ H+ +H
mKIAA1141 566 YECKQ-CGEHFICRsTLNCHLSIH 588
[output cut off at A = 10 top alignments]
//