hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mef/mef00011/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1141 ( 886 res) mef00011 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 365.5 5.5e-106 18 C1_1 Phorbol esters/diacylglycerol binding domain -0.4 0.29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/18 203 225 .. 1 24 [] 30.5 3.8e-05 zf-C2H2 2/18 259 281 .. 1 24 [] 34.2 3e-06 zf-C2H2 3/18 371 393 .. 1 24 [] 30.3 4.4e-05 zf-C2H2 4/18 398 420 .. 1 24 [] 11.0 8.6 zf-C2H2 5/18 426 448 .. 1 24 [] 28.3 0.00018 zf-C2H2 6/18 454 476 .. 1 24 [] 38.5 1.6e-07 zf-C2H2 7/18 482 504 .. 1 24 [] 32.2 1.2e-05 zf-C2H2 8/18 510 532 .. 1 24 [] 30.9 2.9e-05 zf-C2H2 9/18 538 560 .. 1 24 [] 22.8 0.0081 zf-C2H2 10/18 566 588 .. 1 24 [] 16.3 0.74 zf-C2H2 11/18 637 659 .. 1 24 [] 1.7 68 zf-C2H2 12/18 691 713 .. 1 24 [] 16.9 0.49 zf-C2H2 13/18 719 741 .. 1 24 [] 32.6 9.2e-06 zf-C2H2 14/18 747 769 .. 1 24 [] 28.6 0.00015 C1_1 1/1 709 772 .. 1 55 [] -0.4 0.29 zf-C2H2 15/18 775 797 .. 1 24 [] 33.0 6.9e-06 zf-C2H2 16/18 803 825 .. 1 24 [] 34.8 2e-06 zf-C2H2 17/18 831 853 .. 1 24 [] 29.3 8.8e-05 zf-C2H2 18/18 859 881 .. 1 24 [] 29.5 8e-05 Alignments of top-scoring domains: zf-C2H2: domain 1 of 18, from 203 to 225: score 30.5, E = 3.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg+sFs++++L +H+ H mKIAA1141 203 YKCS-ECGESFSQSHHLIQHWVLH 225 zf-C2H2: domain 2 of 18, from 259 to 281: score 34.2, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ L+ H+++H mKIAA1141 259 YTCQ-ECGKRFSQNVYLQWHQKIH 281 zf-C2H2: domain 3 of 18, from 371 to 393: score 30.3, E = 4.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs +L +H+r H mKIAA1141 371 FRCK-KCGETFSGAFHLAKHQRAH 393 zf-C2H2: domain 4 of 18, from 398 to 420: score 11.0, E = 8.6 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC C +F+ +++ +H+++H mKIAA1141 398 YKCA-SCPAVFNLSKHCFQHRKSH 420 zf-C2H2: domain 5 of 18, from 426 to 448: score 28.3, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C ksF+ +s+L +H+ +H mKIAA1141 426 CECQ-GCRKSFNWRSSLIKHQAIH 448 zf-C2H2: domain 6 of 18, from 454 to 476: score 38.5, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+Lk H+r+H mKIAA1141 454 YKCD-ECGKAFNHSSTLKIHQRIH 476 zf-C2H2: domain 7 of 18, from 482 to 504: score 32.2, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r+ +L+ H+r+H mKIAA1141 482 HKCS-ECGKAFCRRTDLTEHQRVH 504 zf-C2H2: domain 8 of 18, from 510 to 532: score 30.9, E = 2.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C ++F+r+s+L rH+ +H mKIAA1141 510 HQCP-VCARTFNRPSHLVRHRLRH 532 zf-C2H2: domain 9 of 18, from 538 to 560: score 22.8, E = 0.0081 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +C+++F k++L+rH ++H mKIAA1141 538 FGCA-KCKETFIYKEQLERHNKIH 560 zf-C2H2: domain 10 of 18, from 566 to 588: score 16.3, E = 0.74 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ F +s+L+ Hl +H mKIAA1141 566 YECK-QCGEHFICRSTLNCHLSIH 588 zf-C2H2: domain 11 of 18, from 637 to 659: score 1.7, E = 68 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ Cg+++ ++ + H+ ++ mKIAA1141 637 GECD-PCGETYDQSVQPICHQSIC 659 zf-C2H2: domain 12 of 18, from 691 to 713: score 16.9, E = 0.49 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ + +++F+++++L +H+ +H mKIAA1141 691 FKCD-IYNRAFKQRAHLSKHQLIH 713 zf-C2H2: domain 13 of 18, from 719 to 741: score 32.6, E = 9.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+++F+++ L +H++tH mKIAA1141 719 FKCN-ECDRAFKQSNYLIQHQKTH 741 zf-C2H2: domain 14 of 18, from 747 to 769: score 28.6, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F ++s L +H+++H mKIAA1141 747 FECS-ECGKTFHQRSCLSKHQKIH 769 C1_1: domain 1 of 1, from 709 to 772: score -0.4, E = 0.29 *->HhFvhrwnfkqptfCdhCgell..........wgslgkqGlkCswCk H+ +h + +p +C+ C+ +++++ +++ + + ++ Cs+C+ mKIAA1141 709 HQLIHI-T-EKPFKCNECDRAFkqsnyliqhqKTHTAEKHFECSECG 753 lnvHkr.ChekVppeCgcg<-* ++H+r+C +k+ + + mKIAA1141 754 KTFHQRsCLSKHQKIHSGE 772 zf-C2H2: domain 15 of 18, from 775 to 797: score 33.0, E = 6.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC dCgk+F + ++L rH+r+H mKIAA1141 775 FKCG-DCGKAFISGAQLIRHQRIH 797 zf-C2H2: domain 16 of 18, from 803 to 825: score 34.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s L+ Hlr+H mKIAA1141 803 YVCQ-ECGKTFSQSSCLTLHLRIH 825 zf-C2H2: domain 17 of 18, from 831 to 853: score 29.3, E = 8.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C Cgk+F +++n ++H r+H mKIAA1141 831 YTCG-TCGKAFAQRANQRKHERIH 853 zf-C2H2: domain 18 of 18, from 859 to 881: score 29.5, E = 8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C Cgk+F + +L++H+r+H mKIAA1141 859 YACG-LCGKAFGLRTHLQQHQRIH 881 //