hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj22197/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1140 ( 926 res) mfj22197 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TPR Tetratricopeptide repeats 74.0 1.8e-17 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TPR 1/7 483 516 .. 1 34 [] 2.0 3e+02 TPR 2/7 601 634 .. 1 34 [] 2.1 2.9e+02 TPR 3/7 635 668 .. 1 34 [] 12.5 19 TPR 4/7 779 812 .. 1 34 [] 5.0 1.4e+02 TPR 5/7 813 846 .. 1 34 [] 21.7 0.1 TPR 6/7 847 880 .. 1 34 [] 4.1 1.7e+02 TPR 7/7 881 914 .. 1 34 [] 26.5 0.0037 Alignments of top-scoring domains: TPR: domain 1 of 7, from 483 to 516: score 2.0, E = 3e+02 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +y+ +++ + g+ + A+ ++++++l+P++ mKIAA1140 483 FHLWYQVALSMVACGKSAYAVSLLRECMKLQPSD 516 TPR: domain 2 of 7, from 601 to 634: score 2.1, E = 2.9e+02 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +++ + ++ + + ++ A+e +++AL++ +++ mKIAA1140 601 PQIIFYVALQLALVRQISSAMERLQEALTMCRDD 634 TPR: domain 3 of 7, from 635 to 668: score 12.5, E = 19 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a al l++++ +++ y+ A++ + A++ P+n mKIAA1140 635 ANALHLLALLFSAQKYYQHALDVINMAITEHPEN 668 TPR: domain 4 of 7, from 779 to 812: score 5.0, E = 1.4e+02 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +++++ +++++ + +++eA + ++A l P+ mKIAA1140 779 EQIWLQAAELFMEQRQLKEAGFCIQEAAGLFPTS 812 TPR: domain 5 of 7, from 813 to 846: score 21.7, E = 0.1 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +ly +G + + +g ++eA + y++AL+++P+ mKIAA1140 813 HSVLYMRGRLAEVKGSFEEAKQLYKEALTVNPDG 846 TPR: domain 6 of 7, from 847 to 880: score 4.1, E = 1.7e+02 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +++ lG+++ +lg A + ++ A+e + ++ mKIAA1140 847 VRIMHSLGLMLSQLGHKSLAQKVLRDAVERQSTF 880 TPR: domain 7 of 7, from 881 to 914: score 26.5, E = 0.0037 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ea+ lG+++ +g+ + A++++ ALel+ + mKIAA1140 881 HEAWQGLGEVLQDQGQNEAAVDCFLTALELEASS 914 //