hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj22197/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1140 ( 926 res) mfj22197 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TPR_2 Tetratricopeptide repeat 107.3 3e-28 8 TPR_1 Tetratricopeptide repeat 77.2 3.5e-19 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TPR_2 1/8 190 223 .. 1 34 [] 1.9 1.3e+02 TPR_2 2/8 483 516 .. 1 34 [] 11.0 11 TPR_1 1/6 556 600 .. 1 34 [] 2.5 18 TPR_2 3/8 601 634 .. 1 34 [] 5.4 50 TPR_1 2/6 635 668 .. 1 34 [] 14.4 0.68 TPR_2 4/8 635 668 .. 1 34 [] 18.1 0.22 TPR_1 3/6 779 812 .. 1 34 [] 6.6 5.9 TPR_2 5/8 779 812 .. 1 34 [] 12.7 7.2 TPR_1 4/6 813 846 .. 1 34 [] 21.9 0.015 TPR_2 6/8 813 846 .. 1 34 [] 24.5 0.0025 TPR_1 5/6 847 880 .. 1 34 [] 4.5 11 TPR_2 7/8 847 880 .. 1 34 [] 8.5 22 TPR_1 6/6 881 914 .. 1 34 [] 27.4 0.00032 TPR_2 8/8 881 914 .. 1 34 [] 25.1 0.0016 Alignments of top-scoring domains: TPR_2: domain 1 of 8, from 190 to 223: score 1.9, E = 1.3e+02 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ea lG+++y g y +A+ y +A d + mKIAA1140 190 CEAMLILGKLHYVEGSYRDAVSMYARAGIDDISV 223 TPR_2: domain 2 of 8, from 483 to 516: score 11.0, E = 11 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + ++y+ +l+ + g+ + A+ +++++ +l P++ mKIAA1140 483 FHLWYQVALSMVACGKSAYAVSLLRECMKLQPSD 516 TPR_1: domain 1 of 6, from 556 to 600: score 2.5, E = 18 *->aeayynlGnaylkl...........gkydeAieayekALeldPnn<- ++ y lG++y + ++ + ++++++ + +A++ +e+A el P++ mKIAA1140 556 PKGYLALGLTYSLQatdatlkskqdELHRKALQTLERARELAPDD 600 * mKIAA1140 - - TPR_2: domain 3 of 8, from 601 to 634: score 5.4, E = 50 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + + ++ +l ++ ++ A e +++Al ++ mKIAA1140 601 PQIIFYVALQLALVRQISSAMERLQEALTMCRDD 634 TPR_1: domain 2 of 6, from 635 to 668: score 14.4, E = 0.68 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a+ l++++ +++ y+ A++ + A+ P+n mKIAA1140 635 ANALHLLALLFSAQKYYQHALDVINMAITEHPEN 668 TPR_2: domain 4 of 8, from 635 to 668: score 18.1, E = 0.22 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a al++l+l+ +++ y+ Al+ + A+ P+n mKIAA1140 635 ANALHLLALLFSAQKYYQHALDVINMAITEHPEN 668 TPR_1: domain 3 of 6, from 779 to 812: score 6.6, E = 5.9 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +++ + + +++++ +++eA + ++A l P+ mKIAA1140 779 EQIWLQAAELFMEQRQLKEAGFCIQEAAGLFPTS 812 TPR_2: domain 5 of 8, from 779 to 812: score 12.7, E = 7.2 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++ + +++ +++++++eA + ++A l+P+ mKIAA1140 779 EQIWLQAAELFMEQRQLKEAGFCIQEAAGLFPTS 812 TPR_1: domain 4 of 6, from 813 to 846: score 21.9, E = 0.015 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++y +G + + +g ++eA + y++AL ++P+ mKIAA1140 813 HSVLYMRGRLAEVKGSFEEAKQLYKEALTVNPDG 846 TPR_2: domain 6 of 8, from 813 to 846: score 24.5, E = 0.0025 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +ly++G++++ +g +eeA+++y++Al +P+ mKIAA1140 813 HSVLYMRGRLAEVKGSFEEAKQLYKEALTVNPDG 846 TPR_1: domain 5 of 6, from 847 to 880: score 4.5, E = 11 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +++ lG+ + +lg A + ++ A+e + ++ mKIAA1140 847 VRIMHSLGLMLSQLGHKSLAQKVLRDAVERQSTF 880 TPR_2: domain 7 of 8, from 847 to 880: score 8.5, E = 22 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +++ + lGl + +lg+ A + ++ A+e + mKIAA1140 847 VRIMHSLGLMLSQLGHKSLAQKVLRDAVERQSTF 880 TPR_1: domain 6 of 6, from 881 to 914: score 27.4, E = 0.00032 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ea+ lG ++ +g+ ++A++++ ALel+ + mKIAA1140 881 HEAWQGLGEVLQDQGQNEAAVDCFLTALELEASS 914 TPR_2: domain 8 of 8, from 881 to 914: score 25.1, E = 0.0016 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ea+ lG+++ +g+ e A++++ Alel+ + mKIAA1140 881 HEAWQGLGEVLQDQGQNEAAVDCFLTALELEASS 914 //