hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00286/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1139  ( 1224 res)   mpg00286

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                159.3    3.9e-43   7
SAM      Sterile alpha motif.                           111.6    9.1e-29   2
SH3      Src homology 3 domains                          37.4    1.9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/7      25    55 ..     1    30 []     2.4  2.2e+03
ANK        2/7      71   100 ..     1    30 []    29.3  0.00052
ANK        3/7     104   133 ..     1    30 []    25.8    0.006
ANK        4/7     137   166 ..     1    30 []    30.4  0.00025
ANK        5/7     170   199 ..     1    30 []    15.9      5.6
ANK        6/7     211   240 ..     1    30 []    35.8  5.9e-06
ANK        7/7     243   272 ..     1    30 []    25.3   0.0085
SH3        1/1     307   369 ..     1    58 []    37.4  1.9e-06
SAM        1/2     508   574 ..     1    67 []    54.5  1.4e-11
SAM        2/2     577   644 ..     1    67 []    57.1  2.3e-12

Alignments of top-scoring domains:
ANK: domain 1 of 7, from 25 to 55: score 2.4, E = 2.2e+03
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                           L lA++ng++ +v+ L+ k     ++   
   mKIAA1139    25    GREQDLILAVKNGDVTCVQKLVAKVKaAKTK    55   

ANK: domain 2 of 7, from 71 to 100: score 29.3, E = 0.00052
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG+++LH+Aa  g+le++ lLl++ a++++   
   mKIAA1139    71    DGFSALHHAALGGSLELIALLLEAQATVDI    100  

ANK: domain 3 of 7, from 104 to 133: score 25.8, E = 0.006
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+ pLH+Aa  g+le v+lLl+++a +na   
   mKIAA1139   104    NGMRPLHYAAWQGRLEPVRLLLRASAAVNA    133  

ANK: domain 4 of 7, from 137 to 166: score 30.4, E = 0.00025
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG+ pLHlAa++g++ev ++Ll++  ++ +   
   mKIAA1139   137    DGQIPLHLAAQYGHYEVSEMLLQHQSNPCL    166  

ANK: domain 5 of 7, from 170 to 199: score 15.9, E = 5.6
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +TpL lA+e g+l+v++lLl++   + +   
   mKIAA1139   170    LKKTPLDLACEFGRLKVAQLLLNSHLCVAL    199  

ANK: domain 6 of 7, from 211 to 240: score 35.8, E = 5.9e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +  TpLHlAa+ng+ ev++ Ll++g +in    
   mKIAA1139   211    NYTTPLHLAAKNGHREVIRQLLKAGIEINR    240  

ANK: domain 7 of 7, from 243 to 272: score 25.3, E = 0.0085
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                         T+LH Aa +g  evv+lLl+ g+d+n+   
   mKIAA1139   243    KTGTALHEAALYGKTEVVRLLLEGGVDVNI    272  

SH3: domain 1 of 1, from 307 to 369: score 37.4, E = 1.9e-06
                   *->eyvvAlYDyea.qnedELsFkkGDiitvleksddgWweGelnr....
                       +v+Al D+    ++  L +++GD+itvle++ dg w+G ++ ++++
   mKIAA1139   307    LKVRALKDFWNlHDPTALNVRAGDVITVLEQHPDGRWKGHIHEsqrg 353  

                   tGkeGlfPsnYVeeie<-*
                   t ++G+fP   Ve++    
   mKIAA1139   354 TDRVGYFPPGIVEVVS    369  

SAM: domain 1 of 2, from 508 to 574: score 54.5, E = 1.4e-11
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       ++ +   + +WL   +le Y+ +F+++g+d     ++t  edL+ +
   mKIAA1139   508    LEgKDAQAIHNWLSEFQLEGYTAHFLQAGYDVPTISRMT-PEDLTAI 553  

                   GitllGhRkkIlsaiqklkeq<-*
                   G+t++GhRkkI+s+i +l      
   mKIAA1139   554 GVTKPGHRKKIASEIAQLSIA    574  

SAM: domain 2 of 2, from 577 to 644: score 57.1, E = 2.3e-12
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       ++  p ++ eWL ++gl+qY +++ + g+d++ l++ ++ e L+e+
   mKIAA1139   577    LPnYIPVDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEI 623  

                   GitllGhRkkIlsaiqklkeq<-*
                   G+++lGh+kk++ +++ l e    
   mKIAA1139   624 GVNKLGHQKKLMLGVKRLAEL    644  

	[output cut off at A = 10 top alignments]
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