hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj23063/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1138  ( 1232 res)   mfj23063

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EXOIII   No definition                                  142.8    3.6e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EXOIII     1/1    1070  1229 ..     1   196 []   142.8  3.6e-38

Alignments of top-scoring domains:
EXOIII: domain 1 of 1, from 1070 to 1229: score 142.8, E = 3.6e-38
                   *->tlvviDcEtTGpdnegeldpgdeIiEiaaVdvdg.evfdtlVkPddr
                       ++++DcE+ +      +  g e++++++Vd+d+++v+dt+VkP d+
   mKIAA1138  1070    GVFALDCEMSY------TTYGLELTRVTVVDTDMqVVYDTFVKP-DN 1109 

                   pipdyateihGSIteemlddgrsaaptfeeVleelleflkgsippgkegv
                   +++dy+t+++G +te++l+d   + +t+++V+  ll+ + +++       
   mKIAA1138  1110 EVVDYNTRFSG-VTEADLVD---TSITLRDVQAVLLSMFSADT------- 1148 

                   clvagNsanfDlrfLklehprlglkeppknpflviDTadlaktlklarkl
                    +++g+s++ Dl +Lk  h              v DT        l++++
   mKIAA1138  1149 -ILIGHSLESDLLALKVIHGT------------VVDT------SVLFPHR 1179 

                   fpglpkagrrkysLkkLaerlgleviq.....HrAldDArataklfkkll
                   ++      ++k+sL++L + ++ ++iq++ ++H++ +DA a++ l+++++
   mKIAA1138  1180 LG-----LPYKRSLRNLMADYLRQIIQdnvdgHSSSEDASACMHLVIWKI 1224 

                   erlae<-*
                   ++ a+   
   mKIAA1138  1225 REDAK    1229 

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