hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj23063/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1138  ( 1232 res)   mfj23063

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Exonuc_X-T Exonuclease                                  114.2    2.4e-30   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Exonuc_X-T   1/1    1071  1220 ..     1   187 []   114.2  2.4e-30

Alignments of top-scoring domains:
Exonuc_X-T: domain 1 of 1, from 1071 to 1220: score 114.2, E = 2.4e-30
                   *->lvviDcEtTGldpkgavsgkstekdeiiEiaavsivngenigevfdt
                      ++++DcE+ ++               ++E+++v++v+ +   +v+dt
   mKIAA1138  1071    VFALDCEMSYTTY-------------GLELTRVTVVDTD-MQVVYDT 1103 

                   yvkPerppkitdyatefhGIteemlddapsfee.vleefleflrklsilv
                   +vkP++   ++dy+t+f+G+te++l d  ++  +v   +l+ +  ++il+
   mKIAA1138  1104 FVKPDNE--VVDYNTRFSGVTEADLVDTSITLRdVQAVLLSMFSADTILI 1151 

                   ahnnkgaafdvgflleedlrflklphpfsnikrndvidtlilarsafkgl
                   +h+           le dl++lk  h         v++++ + ++++ ++
   mKIAA1138  1152 GHS-----------LESDLLALKVIHG------TVVDTSVLFPHRLGLPY 1184 

                   krgqktsLkaLaeklglekiqrgn.aiaHrAldDArataelf<-*
                   kr    sL++L++ ++ ++iq  ++ ++H++ +DA a++ l+   
   mKIAA1138  1185 KR----SLRNLMADYLRQIIQ--DnVDGHSSSEDASACMHLV    1220 

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