hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03488/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1136  ( 1131 res)   mbg03488

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
7tm_3    7 transmembrane receptor (metabotropic gluta   -69.8    1.9e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
7tm_3      1/1     352   604 ..     1   279 []   -69.8  1.9e-05

Alignments of top-scoring domains:
7tm_3: domain 1 of 1, from 352 to 604: score -69.8, E = 1.9e-05
                   *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc
                       ++ A++  ++l  + ++v+ ++r+ + ++As+  L  ++L+g +l+
   mKIAA1136   352    ISFQALC--MLLDFVSMLVVYHFRKAKSIRASGLILLETILFGSLLL 396  

                   flcsflFIgkGtvekPsewsCiLRrilfGlgFtlcySalLaKTirVlraF
                   ++ + ++ ++     Ps++ CiL r++  lgF+  y+++  K  rVl +F
   mKIAA1136   397 YFPVVILYFE-----PSTFRCILLRWARLLGFATVYGTVTLKLHRVLKVF 441  

                   rkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdkdi
                        ++++qr  ++      + v  +  + v++++ +Lv    ++  + 
   mKIAA1136   442 L----SRTAQRIPYMTG----GRVMRMLAVIVLVVFWFLVGWTSSMCQNL 483  

                   hsekekeedeDvsiapiileCnkgsvvaFvvvLgYlglLavlcfflAflt
                   ++         +s    + +C +     +++v  +l lL  + + +A+  
   mKIAA1136   484 ERDILLVGQGQTSDHLTFNMCLIDRWDYMTAVAEFLFLLWGIYLCYAV-- 531  

                   RklPvdnFNEAKfItFSMYNvltfCiV..WvAFiPiYlstpgsaedykvq
                   R +P   F E ++++ ++ N l+  ++ + + F+ +   +p+        
   mKIAA1136   532 RTVP-SAFHEPRYMAVAVHNELIITAIfhTIRFVLASRLQPD-------W 573  

                   vaveifsIl.aSStglLgciFaPKcYIILfkPekn<-*
                     ++ f+  ++  t++ g++ +PK      +   n   
   mKIAA1136   574 MLMLYFAHAhLTVTVTIGLLLIPK----FSHSSNN    604  

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