hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00279/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1134  ( 656 res)   mbh00279

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
COG6     Conserved oligomeric complex COG6             1222.9          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
COG6       1/1      54   655 ..     1   727 []  1222.9        0

Alignments of top-scoring domains:
COG6: domain 1 of 1, from 54 to 655: score 1222.9, E = 0
                   *->daLkaLSefyvensleaRRnLRsdiErrlLkiNeefLkefkeiksel
                      +aLkaLS+f+vensl++RRnLR+diErr+L+iNeef+++fk++k+el
   mKIAA1134    54    EALKALSAFFVENSLRTRRNLRGDIERRSLAINEEFVNIFKDVKEEL 100  

                   drveEdvekmastceklkseletskattqdLiqktetlkeEkerlelrkk
                   ++++Edv++m+s+c++++s+l+++k++tqdLi+kt++l++E++rle+r++
   mKIAA1134   101 ESINEDVQAMSSCCQDMTSRLQAAKEQTQDLIVKTTKLQAENQRLEIRAQ 150  

                   iinaFlanFqLsseElklLdgatrsgpvdedFFkvLdrVqeIhdncklLl
                   +++aFla+FqL+s+E++lL+g tr+gpv+edFFk+L+rV++Ih+++k+Ll
   mKIAA1134   151 VVDAFLAKFQLTSDEMSLLRG-TRGGPVTEDFFKALGRVKQIHNDVKVLL 199  

                   qtqsqtAglSSFEEimekMaliqEgAyerLfRtiiCFqkGsPFLnsFRAn
                   +t++qtAgl    Eime+Mal+qE+AyerL+R                  
   mKIAA1134   200 RTNQQTAGL----EIMEQMALLQETAYERLYR------------------ 227  

                   EktqYwliDFLYSlesqsElrnltttdsqEvseiLrkAfkiLssrpvLFk
                        w+         qsE+r+lt+ +s++vs++L++A+++L++rpvL+k
   mKIAA1134   228 -----WA---------QSECRALTQ-ESCDVSAVLSQAMEALQDRPVLYK 262  

                   ylidevgtaRsqsLlrqFieafdLTrggPgGtprPIELhAHDPlRYiGDm
                   y++de+gtaR+++++r+Fi+a  LTrggPgGtprPIE+h+HDPlRY+GDm
   mKIAA1134   263 YTLDEFGTARRSTVVRGFIDA--LTRGGPGGTPRPIEMHSHDPLRYVGDM 310  

                   LAWlHqaianEKElveaLFdiqdedlkdtPiskldqkkvalkgiedqlqs
                   LAWlHqa+a+EKE++eaL+                 k+v+++g+++++q+
   mKIAA1134   311 LAWLHQATASEKEHLEALL-----------------KHVTAQGVKENIQE 343  

                   vLdeIleGvCrPlKvRvEQillaeknaIilfkisnlLkFYretfskivgq
                   v+++I+eGvCrPlKvR+EQ++lae++a++l+kisnlLkFY++t+s+ivg+
   mKIAA1134   344 VVGHITEGVCRPLKVRIEQVILAEPGAVLLYKISNLLKFYHHTISGIVGN 393  

                   ddssllntlkeLediskqifigvLedhvKetlmrkpkspsdLaLePPqRD
                   ++++ll+t++e++++sk+if+++L++h+ ++lm+k+++p++        D
   mKIAA1134   394 SAATLLTTIEEMHLLSKKIFFTSLSLHA-NKLMDKVELPPP--------D 434  

                   LlPPpaVselLsllkeIleiyesvltaedgeqldfkkllscvLDpllqmc
                   L+P++a+s++L+ll++Il++++s+++++d++q+df+++lsc+LDpllqmc
   mKIAA1134   435 LGPSSALSQTLTLLRDILASHDSSVVPLDARQADFVQVLSCALDPLLQMC 484  

                   qksAerkklkkSfpLakknekekaSlqLtsvDALLsssPsPPllpeidmi
                   ++sA+                                     +l+++dm+
   mKIAA1134   485 TVSAS-------------------------------------NLGTADMA 497  

                   vfliNcLqviqsllarydfldkrvemlqakieayldtLvtlqvselleka
                   +f++N+L++++++la+++f+d+r+emlq++iea+ldtL+++q+s++l+++
   mKIAA1134   498 TFMVNSLYMMKTTLALFEFTDRRLEMLQFQIEAHLDTLINEQASYVLTRV 547  

                   GLDLYSdlyqkiqqhRPDqGsLavtsakdalllkllsaksDtslealdml
                   GL   S++y++iqqhRPDqGsLa+++++da++lk+++a++D++l+a+d+l
   mKIAA1134   548 GL---SYIYNTIQQHRPDQGSLANMPNLDAVALKAAMAQFDRYLSAPDHL 594  

                   lkNVHDKLnYylnqassdetlpqlqqllSpevreeickrsakklvkaYei
                   l                   +pql++llS++v+e+i+k+s++++++aY++
   mKIAA1134   595 L-------------------MPQLNSLLSATVKEQIIKQSTELICRAYAE 625  

                   iykaledpnNGYedPesLlrrppeqVeeiL<-*
                   +++a+++p+N+Y+dPe++l+r+peqV+++L   
   mKIAA1134   626 VHAAVMNPDNAYKDPENILHRSPEQVKTLL    655  

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