hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg00857/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1132 ( 1723 res) mbg00857 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IGc2 Immunoglobulin C-2 Type 284.3 9.1e-81 7 FN3 Fibronectin type 3 domain 237.5 1.1e-66 6 IG Immunoglobulin 208.6 5.8e-58 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGc2 1/7 6 72 .. 1 56 [] 57.4 1.8e-12 IG 1/7 1 82 [. 1 58 [] 30.8 0.00018 IGc2 2/7 99 171 .. 1 56 [] 47.2 2.1e-09 IG 2/7 93 183 .. 1 58 [] 28.4 0.001 IGc2 3/7 187 252 .. 1 56 [] 37.2 2.2e-06 IG 3/7 184 264 .. 1 58 [] 17.1 2.3 IGc2 4/7 278 346 .. 1 56 [] 34.6 1.3e-05 IG 4/7 272 357 .. 1 58 [] 36.9 2.7e-06 IGc2 5/7 372 444 .. 1 56 [] 47.7 1.5e-09 IG 5/7 366 456 .. 1 58 [] 37.5 1.9e-06 IGc2 6/7 471 544 .. 1 56 [] 9.8 0.53 IG 6/7 465 555 .. 1 58 [] 28.2 0.0012 FN3 1/6 557 641 .. 1 69 [] 37.7 1.5e-06 FN3 2/6 657 745 .. 1 69 [] 53.8 2.3e-11 FN3 3/6 760 846 .. 1 69 [] 45.1 9.5e-09 FN3 4/6 861 944 .. 1 69 [] 48.6 8.2e-10 IGc2 7/7 975 1040 .. 1 56 [] 53.3 3.2e-11 IG 7/7 969 1051 .. 1 58 [] 29.7 0.00039 FN3 5/6 1054 1134 .. 1 69 [] 45.3 7.8e-09 FN3 6/6 1149 1230 .. 1 69 [] 19.4 0.5 Alignments of top-scoring domains: IGc2: domain 1 of 7, from 6 to 72: score 57.4, E = 1.8e-12 *->leGqsVtLtCpasgdpvpnItWlk..gkplp.........sgstLti +G +V+L C +g+p+ +I+W+++++ lp++ + ++ s+ tL i mKIAA1132 6 GIGSTVILSCALTGSPEFTIRWYRntELVLPgeaisirglSNETLLI 52 knvsleDsGlYtCvArNsvg<-* +++++++sG Y+C+A+ ++ mKIAA1132 53 SSAQKSHSGAYQCFATRKAQ 72 IG: domain 1 of 7, from 1 to 82: score 30.8, E = 0.00018 *->pp.vtvkeGesvtLtC.as.....titWy.................. + t+ G++v L+C ++++ ti+Wy+++ ++ + ++ + mKIAA1132 1 KKlKTGI-GSTVILSCaLTgspefTIRWYrntelvlpgeaisirgls 46 ...LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* + +L I+++++++s G Y+C at++ ++ + + ++Vl mKIAA1132 47 netLLIsSAQKSHS---GAYQCFATrKAQTAQ--DFAIIVL 82 IGc2: domain 2 of 7, from 99 to 171: score 47.2, E = 2.1e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................s ++G++++L C a g+p p++tW +++p+ +++++++++ + +++++ mKIAA1132 99 NPGEQFSLMCAAKGAPPPTVTWALdDEPVVrdgshrtnqytmsdgtT 145 gstLtiknvsleDsGlYtCvArNsvg<-* s+ +++ + D G+Y+C+ArNsvg mKIAA1132 146 ISHMNVTGPQIRDGGVYRCTARNSVG 171 IG: domain 2 of 7, from 93 to 183: score 28.4, E = 0.001 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ +v++Ge +L C a++ +++t+tW ++ + +++++++++ + mKIAA1132 93 FSeKVVNPGEQFSLMCaAKgapppTVTWAlddepvvrdgshrtnqyt 139 .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<- +++++ +++++++ + D G+Y+C+a+++ gsa+ ++++ mKIAA1132 140 msdgttishMNVtGPQIRDG---GVYRCTARnsVGSAEP-PSIRAMRN 183 * mKIAA1132 - - IGc2: domain 3 of 7, from 187 to 252: score 37.2, E = 2.2e-06 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn G++ ++C++ g+p ++I+W+k+ lp+++++ ++tL++++ mKIAA1132 187 VAGRDTLINCRVIGYPYYSIKWYKdALLLPdnhrqvvfENGTLKLTD 233 vs.leDsGlYtCvArNsvg<-* v++ D+G+Y C++ mKIAA1132 234 VQkGMDEGEYLCSVLIQPQ 252 IG: domain 3 of 7, from 184 to 264: score 17.1, E = 2.3 *->ppvtvkeGesvtLtC.as.....titWy................... +t+++G + ++C++ + + +i+Wy++ ++++++ +++ mKIAA1132 184 --ITAVAGRDTLINCrVIgypyySIKWYkdalllpdnhrqvvfengt 228 LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* L +++v++ +G+Y C + + s+s+ ++++ V+ mKIAA1132 229 LKLtDVQKGMD--EGEYLCSVLiqpQLSISQ--SVHVAVK 264 IGc2: domain 4 of 7, from 278 to 346: score 34.6, E = 1.3e-05 *->leGqsVtLtCp.asgdpvpnItWlk.gkplp...........sgstL +Gq + ++C sgd ItW+k+g+ + ++++ + ++++ s+L mKIAA1132 278 SIGQLLYIPCVvSSGDMPIRITWRKdGQVIIsgsgvtieskeFMSSL 324 tiknvsleDsGlYtCvArNsvg<-* +i++vsl + G+YtC+A+N++ mKIAA1132 325 QISSVSLKHNGNYTCIASNAAA 346 IG: domain 4 of 7, from 272 to 357: score 36.9, E = 2.7e-06 *->pp.vtvkeGesvtLtC.as......titWy................. + ++ G+ + ++C +s+++ + +itW+++++ ++++ + ++ mKIAA1132 272 FEfPPASIGQLLYIPCvVSsgdmpiRITWRkdgqviisgsgvtiesk 318 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L+I++v++ + G+YtC a++ + ++s + +L+V+ mKIAA1132 319 efmssLQIsSVSLKHN---GNYTCIASnaAATVSR--ERQLIVR 357 IGc2: domain 5 of 7, from 372 to 444: score 47.7, E = 1.5e-09 *->leGqsVtLtCpasgdpvpnItWlk..gkplp...............s + G + +L+C ++g+p p ++W++ +g+ p++ ++ + +++ + mKIAA1132 372 IYGKAGVLNCSVDGYPPPKVMWKHakGSGNPqqyhpvpltgriqilP 418 gstLtiknvsleDsGlYtCvArNsvg<-* +s+L i++v +eD G+Y C+A+N vg mKIAA1132 419 NSSLLIRHVLEEDIGYYLCQASNGVG 444 IG: domain 5 of 7, from 366 to 456: score 37.5, E = 1.9e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. p ++ + G +L+C++ + +++ + W++ ++++++++ ++ + ++ mKIAA1132 366 PNnQDGIYGKAGVLNCsVDgypppKVMWKhakgsgnpqqyhpvpltg 412 .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<- + + ++++L I++v +eD G Y C+a+++ g++ s + LtV+ mKIAA1132 413 riqilpnssLLIrHVLEEDI---GYYLCQASngVGTDIS-KAMFLTVK 456 * mKIAA1132 - - [output cut off at A = 10 top alignments] //