hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj06002/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1130 ( 655 res) mfj06002 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RICIN Ricin-type beta-trefoil 43.1 3.8e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RICIN 1/1 529 652 .. 1 135 [] 43.1 3.8e-08 Alignments of top-scoring domains: RICIN: domain 1 of 1, from 529 to 652: score 43.1, E = 3.8e-08 *->rgyfliiggntglCLdvngnsesksdGnpvqlwdChg.....ggnQl g++ ++ +CL+ +g++++ + ++++ C g+ +++ ++Q mKIAA1130 529 PGVIKQGV----NCLESQGQNTA--GDLLLGMGICRGsakspPPAQA 569 WkltYnesdgairinsdlCLtvng........tvtlysCdgtdkgndnQk W ++ d+ i ++CL + ++ ++++++v l++C+ + Qk mKIAA1130 570 WLFS----DHLIQQ-QGKCLAATStlmsspgsPVILQTCNP---KEGKQK 611 WevnkdgtirnpknskkgvdsglcLdvkdgnkvqlwtcngsdapnQkWif W+ ++ + i + sglcL+ k + ++++++c ++ Q+W + mKIAA1130 612 WRRKG-SFIQHS-------VSGLCLETKPA-QLVTSKCQTDA-QAQQWQL 651 e<-* mKIAA1130 652 L 652 //