hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01394/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1125  ( 1253 res)   mbg01394

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BROMO    bromo domain                                    73.3      3e-17   1
PHD      PHD zinc finger                                 53.0    3.9e-11   1
PWWP     domain with conserved PWWP motif                33.3    3.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1     112   153 ..     1    39 []    53.0  3.9e-11
BROMO      1/1     169   276 ..     1   118 []    73.3    3e-17
PWWP       1/1     297   347 ..     1    84 []    33.3  3.2e-05

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 112 to 153: score 53.0, E = 3.9e-11
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgppleepdg.wyCprCk<-*
                      yC vC+++g+ l+C+  C+r yH +Cl+++ e p+g+w+Cp+C    
   mKIAA1125   112    YCwVCHReGqVLCCE-LCPRVYHAkCLRLTSE-PEGdWFCPECE    153  

BROMO: domain 1 of 1, from 169 to 276: score 73.3, E = 3e-17
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      ++ + ++l+ llk  + k+++ g         ++ F++pv+  +  +
   mKIAA1125   169    TMLtIEQLSYLLKFAIQKMKQPG---------TDAFQKPVPLEQ--H 204  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY ++I +PMDL t +k+ ++  Y   e+F+aD + ++ N+ +YN+ ++
   mKIAA1125   205 PDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNH 254  

                   evykdAkkLeklfeeklkelpp<-*
                      + Ak   k +e +++e++    
   mKIAA1125   255 KLTQIAKVVIKICEHEMNEIEV    276  

PWWP: domain 1 of 1, from 297 to 347: score 33.3, E = 3.2e-05
                   *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk
                       +p+ lVwAK kGFP+WPA+ ++ k+                     
   mKIAA1125   297    SNPHPLVWAKLKGFPFWPAKALRDKD--------------------- 322  

                   leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-*
                              ++++ +FFg +d  awv+ ++        
   mKIAA1125   323 -----------GQVDARFFGQHDR-AWVPVNNCYLMS    347  

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