hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01394/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1125 ( 1253 res) mbg01394 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PHD PHD-finger 48.0 2.1e-10 1 Bromodomain Bromodomain 46.0 8.4e-10 1 zf-MYND MYND finger 37.6 2.9e-07 1 PWWP PWWP domain 35.4 1.3e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PHD 1/1 112 155 .. 1 51 [] 48.0 2.1e-10 Bromodomain 1/1 176 262 .. 1 92 [] 46.0 8.4e-10 PWWP 1/1 296 367 .. 1 87 [] 35.4 1.3e-06 zf-MYND 1/1 1062 1096 .. 1 43 [] 37.6 2.9e-07 Alignments of top-scoring domains: PHD: domain 1 of 1, from 112 to 155: score 48.0, E = 2.1e-10 *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe yC vC++ +g+ l+C+ C+r +H++Cl ++ e peg+W+Cpe mKIAA1125 112 YCWVCHR-----EGQVLCCELCPRVYHAKCLRLTSE--PEGDWFCPE 151 Ctpk<-* C mKIAA1125 152 CEKI 155 Bromodomain: domain 1 of 1, from 176 to 262: score 46.0, E = 8.4e-10 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l +ll++ + + +++ p + +f +pV + PDY e+I +PMDL mKIAA1125 176 LSYLLKFAIQK-MKQ-PGTDAFQKPVPLE--QHPDYAEYIFHPMDLC 218 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* T +k+ k+ Y e+F+aD + ++ N+ +YN+ ++ + Ak mKIAA1125 219 TLEKNAKKKMY-GCTEAFLADAKWILHNCIIYNGGNHKLTQIAKV 262 PWWP: domain 1 of 1, from 296 to 367: score 35.4, E = 1.3e-06 *->dfkpgDLVwAKmkGfpwWPAriisqketptsvrkklkrimTqeaksn + +p+ LVwAK+kGfp+WPA+ ++ k+ mKIAA1125 296 CSNPHPLVWAKLKGFPFWPAKALRDKDG------------------- 323 lykVlFFgdhktrawvskkkl....kPl.ldqdidkfkkdekrKg<-* +++ +FFg h+ awv+ ++ +k+++ ++ ++k++ +++ + mKIAA1125 324 QVDARFFGQHDR-AWVPVNNCylmsKEIpFSVKKTKSIFNSAMQE 367 zf-MYND: domain 1 of 1, from 1062 to 1096: score 37.6, E = 2.9e-07 *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-* CanC +ea + C C+n+ YC+ CQ+++W+ +H + C mKIAA1125 1062 CANCKKEAIF-----YC--CWNTSYCDYPCQQAHWP-EHMKSC 1096 //