hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj36158/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1124  ( 1086 res)   mfj36158

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C1       Protein kinase C conserved region 1 (C1) dom    53.3    3.2e-11   1
CNH      Domain found in NIK1-like kinases, mouse cit    50.1    2.9e-10   1
PBD      P21-Rho-binding domain                          48.0    1.2e-09   1
PH       Pleckstrin homology domain.                     37.8    1.5e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1         1/1     400   449 ..     1    61 []    53.3  3.2e-11
PH         1/1     470   590 ..     1    82 []    37.8  1.5e-06
CNH        1/1     613   894 ..     1   375 []    50.1  2.9e-10
PBD        1/1     958   993 ..     1    38 []    48.0  1.2e-09

Alignments of top-scoring domains:
C1: domain 1 of 1, from 400 to 449: score 53.3, E = 3.2e-11
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f++++f++pt C++C +++ g+ +q     g+ C++C + cH +C
   mKIAA1124   400    HQFSIKSFpSPTQCSHCTSLMVGLIRQ-----GYACEVCAFSCHVSC 441  

                   aekvpaqshksglsC<-*
                   ++ +p+        C   
   mKIAA1124   442 KDSAPQ-------VC    449  

PH: domain 1 of 1, from 470 to 590: score 37.8, E = 1.5e-06
                   *->vikeGwLlkks....k.swkkryfvLfngvLlyyksk.........k
                      + ++G++++ ++++ k++w++ y+v+++  L++y+ +++++++++  
   mKIAA1124   470    TAYKGYVKVPKptgvKkGWQRAYAVVCDCKLFLYDLPegkstqpgvV 516  

                   pkgsipLsgcsvre.p................cFeivt.dr.......tl
                    + +++L++ ++ ++    ++  +  +++ +  F+++ +  ++++++++l
   mKIAA1124   517 ASQVLDLRDEEFAVsSvlasdvihatrrdipcIFRVTAsLLgspsktsSL 566  

                   llqAeseeereeWvealqsaiaka<-*
                   l+ +e+e e+++Wv  l+ ++a +   
   mKIAA1124   567 LILTENENEKRKWVGILEGLQAIL    590  

CNH: domain 1 of 1, from 613 to 894: score 50.1, E = 2.9e-10
                   *->naakwnhpitcdqLWGkiLLvgTeeGLYvlnisrqlnkdhegtlekl
                      + +++ ++ + d   G+ + vg eeGLYv+++ r       +  ++ 
   mKIAA1124   613    LIKAVLAAAIVD---GDRIAVGLEEGLYVIELTR-------DVIVRA 649  

                   isrrsvtqiwvleennvLlmisGkkpqlyshpLsaltekkltqgntpiik
                   +  + v qi+++  +++ +++ G++ ++  +p s+               
   mKIAA1124   650 ADCKKVYQIELAPKEKIAILLCGRNHHVHLYPWSSF-------------- 685  

                   dalgsarlviRknvlttkipdvkGNchlcavkvngkrtgilflcaalqss
                   d ++ ++++i+   l    p++kG c l a  +    + +++l +a++  
   mKIAA1124   686 DGAEASNFDIK---L----PETKG-CQLIAT-GTLRKSSSTCLFVAVKRL 726  

                   VvllaqwynplkkfklvksSNNiLNNEledikkflkklivplplfvelvs
                   +  + ++ +   ++ +++                   l  p+ +  + v+
   mKIAA1124   727 ILCY-EIQRTKPFHRKFS------------------ELVAPGHVQWMAVF 757  

                   ssfelpkvciGsdkPVGGdaggdvvqfhqd.phlNslkfkeslvskedls
                    ++    +c+G  +      g+  +++  d+p l        lv++ d+s
   mKIAA1124   758 KDR----LCVGYPS------GFSLLSIQGDgPPL-------DLVNPTDPS 790  

                   lpfaseetssddaTCkpisvvqvqasdgGqRdelLlcydefgvfVNlqGl
                   l+f+s++++      +++++v ++       +e+Llc+   g++V++qG 
   mKIAA1124   791 LAFLSQQSF------DALCAVELKS------EEYLLCFSHMGLYVDPQG- 827  

                   evrrsrkpiltwefmpesfayvepyllafhsngieIrsiktgelNlqela
                     rrsr ++l+w+ +p + +++  ++ + ++ g++++++ t e+ +q++ 
   mKIAA1124   828 --RRSRMQELMWPAAPVACSCSPTHVTVYSEYGVDVFDVRTMEW-VQTIG 874  

                   drsiikarkiRlLgsCeisdrkIllsssp<-*
                         +r+iR L s   + +  ll  +p   
   mKIAA1124   875 ------LRRIRPLNS---DGSLNLLGCEP    894  

PBD: domain 1 of 1, from 958 to 993: score 48.0, E = 1.2e-09
                   *->IStPtGnFkHiaHVGPfDgatgeFtglptewesllkts<-*
                      IS+Pt nF+H+aH+GP+Dg ++++++lp++ +  ++     
   mKIAA1124   958    ISNPT-NFNHVAHMGPGDG-MQVLMDLPLSAAPTVQEE    993  

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