hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00587/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1122  ( 1071 res)   mbh00587

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   142.2    5.4e-38   1
HELICc   helicase superfamily c-terminal domain          84.8      1e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     538   732 ..     1   219 []   142.2  5.4e-38
HELICc     1/1     929  1012 ..     1    86 []    84.8    1e-20

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 538 to 732: score 142.2, E = 5.4e-38
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                          l pyQk +++wl   ++++ ++ila+++G+GKT++++ +l++l
   mKIAA1122   538    QSlSLKPYQKVGLNWLALVhkhgLNGILADEMGLGKTIQAIAFLAYL 584  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                   +++g        +++++L++vP  + +++w +e++ ++ps        l+
   mKIAA1122   585 FQEG--------NKGPHLIVVP-ASTIDNWLREVNLWCPS--------LN 617  

                   vvglygG.sktkekeqlrklksgkt...dilvtTpgrLldll.ngkglsl
                   v+++yg++     ++q+r  +++k+++ +++vtT+ ++++  ++++ ++ 
   mKIAA1122   618 VLCYYGSqEE---RKQIRFNIHNKYedyNVIVTTYNCAISSSdDRSLFRR 664  

                   .nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp
                    +l++ i+DE+H+l++mgs     ++++l+++       r+rlll++Tp 
   mKIAA1122   665 lKLNYAIFDEGHMLKNMGS----IRYQHLMtINA-----RNRLLLTGTP- 704  

                   eienllklflnlpelfpnpvfisvgf.tlepieqf<-*
                    ++n+l ++++      ++ f+++   ++   e++   
   mKIAA1122   705 -VQNNLLELMS------LLNFVMPHMfSSSTSEIR    732  

HELICc: domain 1 of 1, from 929 to 1012: score 84.8, E = 1e-20
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki..kvL
                      d+l+ lLk++    +++++rl+G++  +eR  ++++F+++    ++L
   mKIAA1122   929    DILEVLLKHH----QHRYLRLDGKTQISERIHLIDEFNTDMDifVFL 971  

                   vaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   ++T+++++G++++ +++VI  d++ +p ++ Q+ +R++R G   
   mKIAA1122   972 LSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG    1012 

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