hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh00587/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1122 ( 1071 res) mbh00587 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SNF2_N SNF2 family N-terminal domain 345.2 7.4e-100 1 Helicase_C Helicase conserved C-terminal domain 85.2 1.3e-21 1 ResIII Type III restriction enzyme, res subunit -7.7 0.0011 1 DEAD DEAD/DEAH box helicase -20.7 0.011 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ResIII 1/1 540 706 .. 1 244 [] -7.7 0.0011 DEAD 1/1 542 709 .. 1 266 [] -20.7 0.011 SNF2_N 1/1 545 833 .. 1 356 [] 345.2 7.4e-100 Helicase_C 1/1 934 1012 .. 1 76 [] 85.2 1.3e-21 Alignments of top-scoring domains: ResIII: domain 1 of 1, from 540 to 706: score -7.7, E = 0.0011 *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG ++l pyQ+ + ++l++++k+ +g+++ G G mKIAA1122 540 LSLKPYQKVGL-NWLALVHKH-------------GLNGILADEMGLG 572 KTltaakiliarllkkqqklkhg.riddskvLFlVprkdLleQal.eeFt KT+ a++ + a+l++ +++++ + L++Vp +++ +++ ++ mKIAA1122 573 KTIQAIA-FLAYLFQ-----EGNkG----PHLIVVPASTIDNWLReVNL- 611 kfeskkkkef.knpgvdkklkvltdnqkdsalegkskkndieiifttiQk ++ ++ ++ + + + q ++ ++k +d+ +i+tt+ + mKIAA1122 612 --------WCpSLNVLCYYGSQEERKQIRFNIHNKY--EDYNVIVTTYNC 651 LskalklgkendeeekskstesvvglrlavesleflldefdliIiDEaHr + ++ + ++ + + + I+DE H mKIAA1122 652 AISSSDDRSLFRRLKLN------------------------YAIFDEGHM 677 ssaktksakededatklevyrkilekwelelnkkyfkpaflLGlTATPer + + y+ ++ ++ +L lT+TP mKIAA1122 678 LKNMGSIR-----------YQHLMT----------INARNRLLLTGTPVQ 706 <-* mKIAA1122 - - DEAD: domain 1 of 1, from 542 to 709: score -20.7, E = 0.011 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf + p+Q+ ++ + l+++++ +l+ + G GKT + mKIAA1122 542 LKPYQKVGLNWLA-----------LVHKHGLNGILADEMGLGKTIQA 577 RF xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx llPily.gqrllkgpksarggksqgggknergfkidspqalvlaPTreLa + y q +kgp ++v a T+ mKIAA1122 578 IAFLAYlFQEGNKGP----------------------HLIVVPASTI--- 602 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eQiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqld ++ +e+ +++ ++ vl++yG ++ ++q++ mKIAA1122 603 DNWLREVNLWCP--------------------SLNVLCYYGSQEERKQIR 632 RF xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx kl.rgkreskggpdIvvgTPgrLldllrngrinikievssertgkl.klk ++k e ++++v+T+ ++ + ++l + mKIAA1122 633 FNiHNKYE---DYNVIVTTYNCAISSS-------------DD-RSLfRRL 665 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx nlkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilH +l + ++DE h +l g +++l ++ + mKIAA1122 666 KL---NYAIFDEGH-MLK---NMGSIRYQHLMTINA---RN--------- 696 RF xxxxxxxxxxxxxxxxxxxxxx qkpniQtllfSATlpprevedl<-* +ll++ T+ + +l mKIAA1122 697 ------RLLLTGTP-VQ--NNL 709 SNF2_N: domain 1 of 1, from 545 to 833: score 345.2, E = 7.4e-100 *->YQleGvnWLislyknlvkkendslglggILADEMGLGKTlQtIslla YQ+ G+nWL+ +k gl+gILADEMGLGKT+Q+I++la mKIAA1122 545 YQKVGLNWLALVHKH---------GLNGILADEMGLGKTIQAIAFLA 582 ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn yl + ++k p+L+V+P+St+dnWl+E+ w+p +ln+++yyg+++ mKIAA1122 583 YLFQEGNKG-----PHLIVVPASTIDNWLREVNLWCP-SLNVLCYYGSQE 626 srdqirkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklei +r+qir +++n+ +d+ +v++t+Y+ +++ d++ + + mKIAA1122 627 ERKQIR--FNIHNKYEDY-----NVIVTTYNCAIS--SSDDRSLFRR--L 665 nwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkE + +y i DEG H++KN S ++ l++++ a+nRLlLTGTP QNnL E mKIAA1122 666 KLNYAIFDEG-HMLKNMGSIR--YQHLMTIN-ARNRLLLTGTPVQNNLLE 711 lwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadkteaL l+sLlnF+mP F+s ++++++f+ +++ ++ ++ mKIAA1122 712 LMSLLNFVMPHMFSSST------SEIRRMFSSKTKPAD-----EQSI--- 747 rreknveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcel +ek ++i+ + i+kpf+LRR+K++v+k Lpp K++++ c + mKIAA1122 748 -YEK------ERIAHAKQIIKPFILRRVKEEVLKLLPP--KKDRIELCAM 788 sklQkelYkkflkgeskdvkaindserreggkeknegksrllnlimqLrK s+ Q++lY + + k in+ e k+ + n +mqLrK mKIAA1122 789 SEKQEQLYSGLF---NRLKKSINNLE-----KN-----TEMCNVMMQLRK 825 icNfHPyLf<-* N HP L mKIAA1122 826 MAN-HPLLH 833 Helicase_C: domain 1 of 1, from 934 to 1012: score 85.2, E = 1.3e-21 *->ll.epgikvarlhGglsqeeReeilekFrsgks..kvLvaTdvaarG ll+ ++++++rl+G++ +eR ++++F+++ ++L++T+++++G mKIAA1122 934 LLkHHQHRYLRLDGKTQISERIHLIDEFNTDMDifVFLLSTKAGGLG 980 lDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* ++++ +n+VI d++ np ++ Q+ +R++R G mKIAA1122 981 INLTSANVVILHDIDCNPYNDKQAEDRCHRVG 1012 //