hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg08947/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1121 ( 1392 res) mbg08947 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PH Pleckstrin homology domain. 50.5 2.3e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/1 557 661 .. 1 82 [] 50.5 2.3e-10 Alignments of top-scoring domains: PH: domain 1 of 1, from 557 to 661: score 50.5, E = 2.3e-10 *->vikeGwLlkks...k.swkkryfvLfn.....gvLlyyksk..kpkg + ++G+L +++ ++wkkr+fvL ++ + ++ y++k+ +p++ mKIAA1121 557 MKHSGYLWTIGknvWkRWKKRFFVLVQvsqytFAMCSYREKkaEPQE 603 sipLsgcsvre.p..........cFeivt.drtlllqAeseeereeWvea + L+g++v+ +++ ++ ++++ F v ++ t +++ ++e++r Wv+a mKIAA1121 604 LLQLDGYTVDYtDpqpgleggraFFNAVKeGDTVIFASDDEQDRILWVQA 653 lqsaiaka<-* + +a+ ++ mKIAA1121 654 MYRATGQS 661 //