hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08947/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1121  ( 1392 res)   mbg08947

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1041  Domain of Unknown Function (DUF1041)           131.1      2e-35   1
PH       PH domain                                       52.0    1.3e-11   1
C2       C2 domain                                        6.0        0.4   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1     435   516 ..     1    88 []     6.0      0.4
PH         1/1     557   659 ..     1    92 []    52.0  1.3e-11
DUF1041    1/1     874   979 ..     1   122 []   131.1    2e-35

Alignments of top-scoring domains:
C2: domain 1 of 1, from 435 to 516: score 6.0, E = 0.4
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl
                      L+V ++e ++L+    +n+    Y+++++ g +k    +T  ++ + 
   mKIAA1121   435    LEVVIMEVQGLKSLA-PNRIV--YCTMEVEGGEK---LQTDQAEAS- 474  

                   NPvWNEtFtFevpppdlqetLeieVyDydrfgr...ddflGevs<-*
                    P+W  + +F+ + + l   ++++++ + +     +d+ lG+v+   
   mKIAA1121   475 KPTWGTQGDFS-TTHALPA-VKVKLFTESTGVLaleDKELGRVI    516  

PH: domain 1 of 1, from 557 to 659: score 52.0, E = 1.3e-11
                   *->vikeGwLlkkg..gkkswkkRyfvLfn.....dvLlyykdkkkkpkg
                       +++G+L+  g++ +k+wkkR+fvL + ++ +  ++ y++kk++p+ 
   mKIAA1121   557    MKHSGYLWTIGknVWKRWKKRFFVLVQvsqytFAMCSYREKKAEPQE 603  

                   sipLsgiqvekvpdn....krkncFeirt.dretlllqaeseeerkeWvk
                    + L+g++v++++++++ ++ +  F  + ++  t++++ ++e++r  Wv+
   mKIAA1121   604 LLQLDGYTVDYTDPQpgleGGRAFFNAVKeGD-TVIFASDDEQDRILWVQ 652  

                   aiqsair<-*
                   a  +a     
   mKIAA1121   653 AMYRATG    659  

DUF1041: domain 1 of 1, from 874 to 979: score 131.1, E = 2e-35
                   *->ktvvkdclkaaarvwydfifenakieermekqveqpgpqraPvvpCI
                      ktv+++cl++aa+v+y++++e+akiee+ +k  e        v    
   mKIAA1121   874    KTVIRKCLEQAALVNYSRLSEYAKIEEN-QKDAEN-------V---- 908  

                   LMNNvQglrvqlekkledmGGikLielvisvLkelqekln.......evL
                         g+ ++++kkled+  i+L+elvi+vL++++e++++++ +++e  
   mKIAA1121   909 ------GRLITPAKKLEDT--IRLAELVIEVLQQNEEHHAephvdkgE-- 948  

                   nqFpqelnlgkesAedlwslfavdldsaleEq<-*
                    +F+++++l++e+Ae++ slfavd+d ale+q   
   mKIAA1121   949 -AFAWWSDLMVEHAETFLSLFAVDMDAALEVQ    979  

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