hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01058/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1116  ( 1362 res)   mbh01058

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           60.9    1.6e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/1     572   641 ..     1   121 []    60.9  1.6e-13

Alignments of top-scoring domains:
RRM: domain 1 of 1, from 572 to 641: score 60.9, E = 1.6e-13
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      tl+Vg +  ++++t++dL +lF              ++fG ++s+ +
   mKIAA1116   572    TLWVGQV--DKKATQQDLTNLF--------------EEFGQIESINM 602  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   ++                            +G+a+V +  ++d  +A  +
   mKIAA1116   603 IPP---------------------------RGCAYVCMVHRQDSFRA--L 623  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++l  s+ +++  g +    +++    
   mKIAA1116   624 QKLS-SGSYKI--GSKV---IKIA    641  

//