hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01058/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1116  ( 1362 res)   mbh01058

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     39.9    5.8e-08   1
DUF618   Protein of unknown function, DUF618              9.4     0.0042   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF618     1/1     150   218 ..     1    71 []     9.4   0.0042
RRM_1      1/1     573   640 ..     1    74 []    39.9  5.8e-08

Alignments of top-scoring domains:
DUF618: domain 1 of 1, from 150 to 218: score 9.4, E = 0.0042
                   *->snnRkKLvNlLYLANDVvQnSKvrKgpE..TFvdeFspvlveAfahi
                      ++   K++ +LY+   +v +S+ + g E++ F + Fs+ + + f   
   mKIAA1116   150    PE--YKVP-GLYVIDSIVRQSRHQFGQEkdVFAPRFSNNIISTFQNL 193  

                   ieegddkvKkklkRvinIWkeRnvFs<-*
                   + +++ + K+k+ Rv+n W+  nvF    
   mKIAA1116   194 Y-RCPGDDKSKIVRVLNLWQKNNVFK    218  

RRM_1: domain 1 of 1, from 573 to 640: score 39.9, E = 5.8e-08
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+Vg   + +t++dL  lF++fG+iesi++++        ++G+a+V
   mKIAA1116   573    LWVGQVDKKATQQDLTNLFEEFGQIESINMIP--------PRGCAYV 611  

                   eFedeedAekAldalnG..kelggrelrv<-*
                    +    d  +Al++l  +++++g++++++   
   mKIAA1116   612 CMVHRQDSFRALQKLSSgsYKIGSKVIKI    640  

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