hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00401/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1115 ( 774 res) mbg00401 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SAPS SIT4 phosphatase-associated protein 362.5 4.5e-105 1 P16-Arc ARP2/3 complex 16 kDa subunit (p16-Arc) -57.5 0.71 1 DUF605 Protein of unknown function, DUF605 -101.6 0.38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- P16-Arc 1/1 29 151 .. 1 154 [] -57.5 0.71 SAPS 1/1 142 439 .. 1 629 [] 362.5 4.5e-105 DUF605 1/1 469 712 .. 1 308 [] -101.6 0.38 Alignments of top-scoring domains: P16-Arc: domain 1 of 1, from 29 to 151: score -57.5, E = 0.71 *->tdfRkvDVDsfdeekfreededlVeaeeAevesaaigPderevrslL t ++k D + +e ++eed +++++ r++ +L mKIAA1115 29 TLLEKEDLS--LPELLDEED-----------VLQECKVVNRKLLDFL 62 tqGksldALqa.aLtnpPiktkdQavKdralniVlkVLtsfKaaDIeaaV q +l+A a +++ pP + +++++ ++ ++ + Lts D+++ mKIAA1115 63 LQPSHLQAMVAwVTQEPPA-SGEERLRYKYPSVACEILTS----DVPQIN 107 kkLddeeiDiLMKYiYrGletPsGegsSalvLLkWHEKlvakgGlGsIVR ++L +e+ L + +Y l++ G++ + L +K+ + mKIAA1115 108 DALGADES--LLNRLYGFLQS--GDSLNP-LLASFFSKVMGI-------- 144 VLsdRkrv<-* L +Rk+ mKIAA1115 145 -LINRKTD 151 SAPS: domain 1 of 1, from 142 to 439: score 362.5, E = 4.5e-105 *->necLLdrktdqlleFlkskdnfVdklLkHIgtsaIECLMDlLLrlis +++L++rktdql++Fl++kd+fVd+lL+HIgtsaI MDlLLrl++ mKIAA1115 142 MGILINRKTDQLVSFLRKKDDFVDLLLRHIGTSAI---MDLLLRLLT 185 tiDkpesrytgvieWLyeqnLiekLvdlLrpseydpldvqsnaadfLCai ++++p++r ++v++WL+e++++++L+++++ps+ d+ +++sna+++LC+i mKIAA1115 186 CVERPQLR-QDVFNWLNEEKIVQRLIEQIHPSK-DD-NQHSNASQSLCDI 232 iriSrdKLYIMnskldiqssigPNeLtrqLvSpetieqLldimlVEEGCP ir+Sr +++++ q+s++P++L+++L+++etieqLl++m+ mKIAA1115 233 IRLSR------EQMIQGQDSPEPDQLLATLEKQETIEQLLSNMF------ 270 AedeasPkggsaLvsgvsiiIeLirknnsdveYdtvnslrttLLQKeEie e+e+ +s++vsg++++++L++++++++ + t+n +++++ + mKIAA1115 271 -EGEQC---QSVIVSGIQVLLTLLEPRRPRSDSVTMNNFFSSV------D 310 thLiEERHYSYGLmRPCldnPPteRdPqiylgellegfLaprLpdFlqTL ++L+ l+++++ + + l+++ +prL F+q L mKIAA1115 311 GQLE-------------LLAQGALDNA-LSSMGALHAL-RPRLDRFHQ-L 344 LlkpeadgdklPLLeTtyGklePPLGfeRlKIcELIAeLLhcsnmallne Ll+ PP + mKIAA1115 345 LLE-------------------PP-------------------------K 350 prGEdIvreRDklRdklfehdqeaesnarievkededdnddtvednneed mKIAA1115 - -------------------------------------------------- - knnnedandsndeeerkdkikkkvkddnlvstkvdseeseaepvdeeeed mKIAA1115 - -------------------------------------------------- - akdeddedDdadesfEipydsesieeklRslPvVGDfLKInLidtgvipr mKIAA1115 - -------------------------------------------------- - iLDlFFeYPWNNFLHnvVediiqqiLngpmdndyNastevtdyftesptd mKIAA1115 - -------------------------------------------------- - qqeSeaTlnDldSppdsfLvkhLlqecdsdvfLiekIleaweecalagDs Llq c+ L+e+Il +wee+ mKIAA1115 351 --------------------VQLLQHCR----LVERILASWEEN------ 370 isdfilpgnkdsvaksgkkglRlGYMGHLTrIAeevvkftelypesniqi d+v+ +g+R+GYMGHLTr+A++vv++ e +p+++ q mKIAA1115 371 ----------DRVQSG--GGPRKGYMGHLTRVANAVVQNAEQGPNAE-QL 407 qqllklsslledeeWeeyvedvLaeTrekynv<-* qllk+++ +++ +We++v+ +LaeT++k++v mKIAA1115 408 GQLLKELPEEQQQRWEAFVSGPLAETNKKNTV 439 DUF605: domain 1 of 1, from 469 to 712: score -101.6, E = 0.38 *->mKiPrskeTkearkfLmgLldqLEalKkQLadNeAitqeidaqaHiE + + + + +d +++ e + + +++ mKIAA1115 469 LQQ--AFMDFQMQRMTSAFIDHFGFNDEEFGEQEESVNAPFDKTANI 513 nFALkLFayADkqdRtGnadknvVkaFYtASvLfdilsqFTDDGeldee. F L AD+ +n n Y d ++qF DD e ee+ mKIAA1115 514 TFSLN----ADD----ENPNANLLEICY-----KDRIQQF-DDEEEEEEe 549 ....alqkrKYAkWKATyIhkcLknGepp.......vPgpnGkdeDaDdd ++++a++ Y +W + + pp+ ++++++ + +de D + mKIAA1115 550 gqgsAESDGEYGAWQGSQPVRASQASQPPgvrsggsTDSEE-EDEEEDEE 598 LeaeGvsGsnDaGAadTfTTaparteldPtfqpnddSsraqfPevPqqPa e eG + +++ Ss P+ mKIAA1115 599 -EDEGGAACGRTSP----------------------SSF---------PS 616 PastydheNaPslpYtagviP......PpaseklntPd..klPsttgvds P+ +++ Ps t + +P + +++Pp+s ++ ++ + Ps++ + mKIAA1115 617 PSTQPP---GPSWTATFDTVPmdaptgPPVSKEADM-SsiQIPSSPP-AH 661 eLFEAkIkpyktPvSHslyPqppkktyvPPqPqqtsstqqpLSsPsavPs +p +l q+p +P q + ++ P a mKIAA1115 662 G------SP-------QLRSQDPTHPSAP----QEVTDSSKVAEPLA--- 691 laptPssaeqrYeatssaggvvltpgevptd<-* +a +s+++v++t + ++ mKIAA1115 692 ----------PCQALVSVADVQATLHGMRSA 712 //