hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21942/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1112  ( 280 res)   mbg21942

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                       59.3    8.1e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1      90   196 ..     1    92 []    59.3  8.1e-14

Alignments of top-scoring domains:
PH: domain 1 of 1, from 90 to 196: score 59.3, E = 8.1e-14
                   *->vikeGwLlkkg.gkkswkkRyfvLfndvLlyykdkk.....kkpkgs
                      +i++G+L++ ++   + ++R f+Lf+++L+y+k++  +++   +kg 
   mKIAA1112    90    LIHSGELTRVTqPQARSQQRMFFLFDRQLIYCKKDLlrrdvLYYKGR 136  

                   ipLsgiqvekvpdn.......krkncFeirt.dr.etlllqaeseeerke
                   +++++++v++v+d+++++ +   kn+F++ +++ ++++ll+a  +e++++
   mKIAA1112   137 LDMDDLEVVDVEDGkdrdlhvSVKNAFRLYCgTTgDSHLLCARKPEQKQR 186  

                   Wvkaiqsair<-*
                   W+ka+ ++ +   
   mKIAA1112   187 WLKAFARERE    196  

//