hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06704/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1111  ( 1005 res)   mbg06704

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 27.1     0.0025   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1       2    36 ..     1    39 []    27.1   0.0025

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 2 to 36: score 27.1, E = 0.0025
                   *->yCvCgkgllqCdkgCdrwyHv.Clgpple..epdg.wyCprCk<-*
                             ++ Cd +C++w+H +C+g ++e+ +  + + Cp+C    
   mKIAA1111     2    -------MIECD-MCQDWFHGsCVGVEEEkaADIDlYHCPNCE    36   

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