hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06704/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1111  ( 1005 res)   mbg06704

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                     47.2    3.6e-10   1
PHD      PHD-finger                                      12.8      0.018   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1       1    38 [.     1    51 []    12.8    0.018
JmjC       1/1     216   316 ..     1   126 []    47.2  3.6e-10

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 1 to 38: score 12.8, E = 0.018
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple.eppegkWlCp
                                    +++ CD C +wfH++C+g ++e++   + ++Cp
   mKIAA1111     1    --------------FMIECDMCQDWFHGSCVGVEEEkAADIDLYHCP 33   

                   eCtpk<-*
                   +C +    
   mKIAA1111    34 NCEVL    38   

JmjC: domain 1 of 1, from 216 to 316: score 47.2, E = 3.6e-10
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      ++ + +  S+t++Hi+  g++ ++y+++ ++k+ Y+i p +a+    
   mKIAA1111   216    YCLMSVRDSYTDFHIDFGGTS-VWYHVLKGEKIFYLIRPTNANLTL- 260  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                       + +                 ++++ ++  ++   +e+   +y++  
   mKIAA1111   261 --FECWSS---------------SSNQNEMFFGDQ---VEK---CYKCSV 287  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   k+G+++f+++g++H+v++  +++a+  NF   
   mKIAA1111   288 KQGQTLFIPTGWIHAVLTPVDCLAFGGNF    316  

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