hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05269/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1110  ( 911 res)   mbg05269

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    309.5    2.4e-88   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1     368   559 ..     1   226 []   309.5  2.4e-88

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 368 to 559: score 309.5, E = 2.4e-88
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                      +  rk+l+ +g ++fn +P+kGiqfL+++gf++    d+p  vA+fl
   mKIAA1110   368    DTLRKRLYRIGLNLFNINPDKGIQFLISRGFIP----DTPIGVAHFL 410  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                              +++gl++++iG++Lg+s ++fnr+vL++ vd++dFs+++
   mKIAA1110   411 L----------QRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSNME 450  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ldeALR+f  ++r++GEaQk++Rl+eaFs+rYc+cNp+v +++       
   mKIAA1110   451 LDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFH------ 494  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       n+D++++La+++I+LNTD+++pn+k  +      KM +edFi+Nlr
   mKIAA1110   495 ----NPDTIFILAFAIILLNTDMYSPNIKPDR------KMMLEDFIRNLR 534  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g++    dg d+pre+  ++Y++I+ +e+   
   mKIAA1110   535 GVD----DGADIPRELVVGIYERIQQKEL    559  

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