hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05269/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1110  ( 911 res)   mbg05269

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    232.1    8.1e-66   1
IQ       IQ calmodulin-binding motif                     17.9       0.24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IQ         1/1      29    49 ..     1    21 []    17.9     0.24
Sec7       1/1     368   559 ..     1   221 []   232.1  8.1e-66

Alignments of top-scoring domains:
IQ: domain 1 of 1, from 29 to 49: score 17.9, E = 0.24
                   *->rraaikIQaawRGylaRkryk<-*
                      rraa +IQ a+R y+  k+++   
   mKIAA1110    29    RRAACTIQTAFRQYQLSKNFE    49   

Sec7: domain 1 of 1, from 368 to 559: score 232.1, E = 8.1e-66
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                         rk+   +g + FN  P+kGi++Lis+g+++  ++p  +A fLl 
   mKIAA1110   368    DTLRKRLYRIGLNLFNINPDKGIQFLISRGFIP--DTPIGVAHFLL- 411  

                   eteGLdKkaiGefLGe.nddfniqvLneFvkNlFdFtglpLdeALRlfLk
                     +GL+  +iGefLG++   fn +vL+  v+ ++dF+++ LdeALR+f  
   mKIAA1110   412 QRKGLSRQMIGEFLGNsKKQFNRDVLDCVVD-EMDFSNMELDEALRKFQA 460  

                   sFRLPGEaQkIdRileaFSerYiqcQyNpgv...fsnkkaEDdIecvqpd
                    +R  GEaQk +R++eaFS+rY++c  Np+v ++f n             
   mKIAA1110   461 HIRVQGEAQKVERLIEAFSQRYCMC--NPEVvqqFHNP------------ 496  

                   aDsayvLsYSlIMLNTDLHNNpqVK.kKkikMTledFieNnrrdLREENE
                    D+ ++L++++I+LNTD   +p++K+++  kM ledFi+N+r        
   mKIAA1110   497 -DTIFILAFAIILLNTDMY-SPNIKpDR--KMMLEDFIRNLR-------- 534  

                   YEELgindGgDlprefLtelYesIkneei<-*
                       g++dG+D+pre+   +Ye I+ +e+   
   mKIAA1110   535 ----GVDDGADIPRELVVGIYERIQQKEL    559  

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