hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg02140/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1108 ( 1266 res) mbg02140 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TBC TBC domain 115.6 9.2e-31 1 PID Phosphotyrosine interaction domain (PTB/PID) -9.5 0.018 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PID 1/1 32 172 .. 1 166 [] -9.5 0.018 TBC 1/1 895 1114 .. 1 219 [] 115.6 9.2e-31 Alignments of top-scoring domains: PID: domain 1 of 1, from 32 to 172: score -9.5, E = 0.018 *->FeVkYLGsvEVpeemrapskstRmqvareairrlkmavpgKkpkakk F +++Gs++V + p +va +rrl+ + mKIAA1108 32 FGLQLVGSLPVHSLTTMPMLP--WVVAE--VRRLSGQ---------- 64 ikrskgstgerqagtkidLsistdglklldektea......ekevlheh. +++++++t + + L++s +gl+ + ++ ++ + + e++ mKIAA1108 65 CSKKEPRT------KQVRLWVSPSGLRCEPDLEKSqpwdplICSSIFECk 108 ..plrkISFiAvggDpdVdlrtFayvrstddsliaadgatsrfaCHvFec +++++k+ ++ Dp +Fa li +d a ++ C+vF + mKIAA1108 109 pqRVHKLIHNSH--DPS----YFAC-------LIKEDAAHRQSLCYVFKA 145 ekgkqlAe..diaqavgqAFevaYqeflra<-* ++ +++ ++i+++++qA a qe lr+ mKIAA1108 146 DD---QTKvpEIISSIRQAGKIARQEELRC 172 TBC: domain 1 of 1, from 895 to 1114: score 115.6, E = 9.2e-31 *->vkeGvpsstrakVWavcsgAyqlrYAsage.......Yerllrrgde v Gvp r+++W + l+ + +++++ +Y +ll++ + mKIAA1108 895 VGQGVPRHHRGEIWKFLAEQFHLKHPFPSKqqpkdvpYKELLKKLTS 941 kesqavdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvg + I D+ Rt + F + G g+ +L ++L AYs +vg mKIAA1108 942 QQHA----ILIDLGRTFPTHPYFSAQ-LGAGQLSLYNILKAYSLLDQEVG 986 YcQGMNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDq YcQG va +Ll + SEe+AF +L L+ K y pd+ mKIAA1108 987 YCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQM 1035 kvLdsfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIf L + + LY +L+ + + + ++ pwfL+++a Pl r+f mKIAA1108 1036 YQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTVFASQFPLGFVARVF 1085 DiLFadGivllfrvaLAvLkilkeqiLda<-* D+ F G+ + f+vaL L + k iL++ mKIAA1108 1086 DMIFLQGSEVIFKVALSLLGSHKPLILQH 1114 //