hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00011/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1106 ( 1211 res) mbg00011 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2HC Zinc finger, C2HC type 364.6 1e-105 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2HC 1/6 54 84 .. 1 31 [] 68.3 1.6e-16 zf-C2HC 2/6 528 558 .. 1 31 [] 61.6 1.7e-14 zf-C2HC 3/6 572 602 .. 1 31 [] 67.0 4e-16 zf-C2HC 4/6 927 957 .. 1 31 [] 73.8 3.7e-18 zf-C2HC 5/6 976 1006 .. 1 31 [] 68.3 1.6e-16 zf-C2HC 6/6 1029 1059 .. 1 31 [] 65.4 1.2e-15 Alignments of top-scoring domains: zf-C2HC: domain 1 of 6, from 54 to 84: score 68.3, E = 1.6e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +++CPtpGCdGsGHv+Gky++Hrs++GCPla mKIAA1106 54 LFSCPTPGCDGSGHVSGKYARHRSVYGCPLA 84 zf-C2HC: domain 2 of 6, from 528 to 558: score 61.6, E = 1.7e-14 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e kCPtpGCdG+GHvtG y +HrslsGCP++ mKIAA1106 528 ESKCPTPGCDGTGHVTGLYPHHRSLSGCPHK 558 zf-C2HC: domain 3 of 6, from 572 to 602: score 67.0, E = 4e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv+++++sHrslsGCP+a mKIAA1106 572 VLKCPTPGCTGRGHVNSNRNSHRSLSGCPIA 602 zf-C2HC: domain 4 of 6, from 927 to 957: score 73.8, E = 3.7e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* elkCPtpGCdGsGH+tG+y+sHrslsGCP+a mKIAA1106 927 ELKCPTPGCDGSGHITGNYASHRSLSGCPRA 957 zf-C2HC: domain 5 of 6, from 976 to 1006: score 68.3, E = 1.6e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CP+pGCdG+GH+tGky+sHrs+sGCPla mKIAA1106 976 PIRCPVPGCDGQGHITGKYASHRSASGCPLA 1006 zf-C2HC: domain 6 of 6, from 1029 to 1059: score 65.4, E = 1.2e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CPtpGCdGsGHv+G++ +HrslsGCP+a mKIAA1106 1029 GMSCPTPGCDGSGHVSGSFLTHRSLSGCPRA 1059 //