hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02389/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1102  ( 785 res)   mbh02389

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LIM      Zinc-binding domain present in Lin-11, Isl-1    37.9    1.4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LIM        1/1     714   772 ..     1    52 []    37.9  1.4e-06

Alignments of top-scoring domains:
LIM: domain 1 of 1, from 714 to 772: score 37.9, E = 1.4e-06
                   *->kCagCgkpItg..devlralgkvwHpeCFkCskCkkpLgg.....tf
                       C+ Cg  +  + +++++ l+ ++H +CF+C +Ck +Lg+  +++  
   mKIAA1102   714    LCSSCGLTLGKgaAMIIETLNLYFHIQCFRCGICKGQLGDavsgtDV 760  

                   fekdgklyCkdc<-*
                     ++g l C dc   
   mKIAA1102   761 RIRNGLLNCTDC    772  

//